Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60540g00007 ATGGGAATTTGTTTGAGCAACCAAATTAAAGCTGAGACACCATTTAACCCTGGGTTAAGTTCAAAGAATGTTGGTACCAATGGAAATGATATCAGCAACCAAACTAGTAAGGTTTCAACGCCTCCGAATCCACGAAGTGAGGGTGAGATCTTGCAGTCATCAAATCTAAAGAGCTTTACTTTGATGGAACTTAAGGCCGCAACACGAAATTTTCGCCCTGACAGCGTCTTGGGAGAAGGTGGATTCGGGTCAGTATTTAAGGGATGGATTGATGAGCAGTCATTTGCAGCTGCTAAACCTGGCACTGGCATTGTAATTGCTGTGAAGAAACTTAATCAGGATGGTTTCCAAGGTCACAAGGAGTGGTTGGCTGAGGTAAACTATCTAGGCCAGCTTTCTCATCCCCACTTGGTGAAATTGATTGGGTATTGCCTTGAAGATGAACACCGCCTTCTGGTCTACGAATTCATGCCTCGTGGCAGCTTGGAGAATCATTTGTTCAGGAGAGGCTCATATTTTCAACCTCTTTCGTGGTGTCTTCGCTTGAAGGTCGCTCTCGGTGCTGCAAAAGGCCTTGCATTTCTTCACAGTGCTGAAACAAAAGTGATATATAGGGACTTCAAGACTTCAAATGTGTTGCTTGATTCAAATTATAATGCAAAACTTTCTGATTTCGGTTTGGCGAAGGATGGCCCTACCGGCGACAAAAGTCATGTCTCCACAAGGGTAATGGGAACCTATGGATATGCAGCTCCTGAATATCTAGCAACTGGTCATCTCACTGCTAAGAGTGATGTCTTTAGTTTTGGAGTTGTCCTATTGGAAATGTTATCTGGCCGGAGGGCTGTTGACAAGAACCGTCCTTCAGGGCAGCACAACTTGGTGGAATGGGCTAAGCCATACCTCGCCAACAAGCGAAAGGTTCAGCGAGTGATGGATAACCGTCTAGAAGGCCAATACTCGCCAGATGAAGCCTTTAAGGTAGCTGTCCTTGCACTAAGGTGCCTAGCACCAGAGTTCAAGTTGAGGCCAAGCATGGATGAAGTTGTTGCCAGTTTGGAGAAGCTTCAGATTGTCAATGTAAATCAGAACCGTCCTGGAAATAGCCATAGAGCTCGCAGAAAAAGCGCCGATGATGCTAGGCCTGGGAGAATTGGCACGGCATATCCTCGGCCATCTGCTACTGCAGCTACCGCACTTTGCACTTGA 1209 0.4615 MGICLSNQIKAETPFNPGLSSKNVGTNGNDISNQTSKVSTPPNPRSEGEILQSSNLKSFTLMELKAATRNFRPDSVLGEGGFGSVFKGWIDEQSFAAAKPGTGIVIAVKKLNQDGFQGHKEWLAEVNYLGQLSHPHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWCLRLKVALGAAKGLAFLHSAETKVIYRDFKTSNVLLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVFSFGVVLLEMLSGRRAVDKNRPSGQHNLVEWAKPYLANKRKVQRVMDNRLEGQYSPDEAFKVAVLALRCLAPEFKLRPSMDEVVASLEKLQIVNVNQNRPGNSHRARRKSADDARPGRIGTAYPRPSATAATALCT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60540g00007 402 PANTHER OS01G0588500 PROTEIN-RELATED 33 357 - -
Stsc60540g00007 402 MobiDBLite consensus disorder prediction 362 402 - -
Stsc60540g00007 402 FunFam Serine/threonine-protein kinase BIK1 38 156 - -
Stsc60540g00007 402 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60540g00007 402 SUPERFAMILY Protein kinase-like (PK-like) 40 353 IPR011009 -
Stsc60540g00007 402 FunFam Probable serine/threonine-protein kinase PBL8 157 373 - -
Stsc60540g00007 402 Gene3D Transferase(Phosphotransferase) domain 1 157 378 - -
Stsc60540g00007 402 CDD STKc_IRAK 77 356 - -
Stsc60540g00007 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Stsc60540g00007 402 Gene3D Phosphorylase Kinase; domain 1 46 156 - -
Stsc60540g00007 402 MobiDBLite consensus disorder prediction 15 50 - -
Stsc60540g00007 402 Pfam Protein tyrosine and serine/threonine kinase 75 353 IPR001245 GO:0004672|GO:0006468
Stsc60540g00007 402 ProSitePatterns Protein kinases ATP-binding region signature. 77 110 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60540g00007 Stsc-Chr60540 35069 37453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60540g00007 20 353 Glycoside Hydrolase AT3G07070 46.821 1.63e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc60540g00007 PK_Tyr_Ser-Thr 5.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60540g00007 - - qsa:O6P43_028227 638.647