Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60540g00004 ATGGGAAACGGCATAGGGAAGCTTACGGTGTGCTTCAGCGGAGGCGGAGGACGCCGCCGCAAGCACGACATATCCATCGTTATAACAGAGCCACTCGACGAGGGTCTGGGTCACTCGTTCTGCTATGTTAGGCCCGACCCGACCCGAATTTCGTCTTCGAAGGTTCACTCTGAAGAAACCACTACCTTCAGAACAATCTCCGGCGCCTCCGTGAGCGCCAACACATCGACGCCACTCTCAACTTCCTTTGTGGATCTCTACTCTTACGGTTGCATCGATAGAGCTGCGGCTTTCGAGAGCTCAACCTCCTTCGCCGCGCTTCCTCTTCAACCCATTCCAAAGGGGTTCGCCAATTCGGGTCCTTTTTCCGGTAACTTAAACGGGTTCCCTGCATCGGGTCCTCTTGAGAGAGGCTTCATGTCAGGCCCGATTGAGCGGGGCTTCATGTCAGGCCCGATTGAGCGGGACAGTTCCGATCAGTTTCAGAGAAGCTTCTCTCATGGCGGCTTGAGTTCGGGTCTTGGGATCCGGCCCGGAACAAGAAAGGCCCGGTGGATTCGGATGCTCCGGAGGGCGATTTCGAAGACCCTTCGGCAAGGTTCGATCGTGGCCNNNNNNNNNNTGGCGCCGGCGGGGAGGGAGCCGCCGGAGTGGGTTATTGCGGCGGCGGAGAAGCAGAACGAGAACACGGTGAACAGCGTGAATTTCAGCAGCGAAGGGAGCTTCTTAGAGGACGATGATTCAACTACGGCGGCGATGGAGGGTCACCAGAACGTTCAGTGGTGTCAGGGGAAAGCAGGGGAGGACCGTGTCCACGTGGTGGTGTCGGAGGAACACGGTTGGGTTTTTGTGGGGATCTATGATGGATTCAACGGCCCAGATGCGCCCGATTTCTTGCTTTCGAATCTGTACAACGCAGTGCATAAGGAGCTCAAGGGTTTGCTTTGGGATGATGGGGTTGATGGCAATTCCAATTTGGGGGCTAAAGATTCGATCTTGACAACTGGGGATGATGATACCGATGCTTGTGCTGGCTCTGTTGATCATCAGAATAATATGAATGATGAAGATGTTAATTTTGATGATCATGGTTTGAAGAGAAAAAAGGGAAGTGGAAGGAGCTCTAAGAACAAGTACAAAGGGGCTGCCAAGAAATGGGAGGAGAATCAGATGAGGTGGAAGTGCGAGTGGGATCGGGAAAGAGTTGAACTTGATCGGAGACTGAAGGAGCAGCTAACTGAATCCGACGGTGATGGCTCCATGATGGTGAACCATTCCGATGTGTTGGAAGCTCTGTCAAGAGCTCTTAGGAAGACGGAGGAGGGTTTCTTGGAGGTGGCGGATAAGATGGTGATGGAGAATCCTGAGCTTGCTCTAATGGGGTCTTGTGTTCTTGTTNNNNNNNNNNTGTTGATGAAAGGTGAAGATGTTTATGTGATGAATGTTGGAGATAGTAGAGCTGTTCTTGCTCAGAAGGCTGAGCCTGATTACTGGCTTGGCAAGATTAGGCAAGATTTGGAGAGGATCAATGAGGAGACCATGAATGATCTTGAGTCTTGGGATGTTGATCGATCCTCCTTGGTCCCTACTCTTACCTCCATTCAGCTCACCAAGGATCATAGCACCAACGTTGATGAGGAAATCCAAAGAATAAGAAAAGAACACCCGGATGATCCTTTCGCCCTTGTAAACGATCGCGTTAAGGGTTCTCTCAAGGTTACTCGAGCATTCGGTGCCGGATTTCTCAAACAGCCCAAATGGAACAATGCACTGTTGGAGATGTTTAGAATAGATTATGTGGGAAGCTCTCCATACATAAGTTGCTTGCCATATCTAAAACATCATAGATTAGGGGCAAAGGACAAGTTTTTGATTCTATGTTCAGATGGGTTGTACCAATACTTGTCAAATGAAGAAGCAGTAGCTGAAGTTGAAATCTTTATCACATTGCAACCTGAAGGAGACCCTGCTCAGCATTTGGTTGAGGAAGTCTTATTTCGCGCTGCCAAAAAAGCTGGTTTGGACTTTCACCAATTGCTTGAAATTCCACAAGGTGATAGACGTCGATACCATGATGATGTCTCCATCATTGTTATTTCTTTGGAAGGAAGGATATGGAGATCATGTGTATAA 2133 0.4904 MGNGIGKLTVCFSGGGGRRRKHDISIVITEPLDEGLGHSFCYVRPDPTRISSSKVHSEETTTFRTISGASVSANTSTPLSTSFVDLYSYGCIDRAAAFESSTSFAALPLQPIPKGFANSGPFSGNLNGFPASGPLERGFMSGPIERGFMSGPIERDSSDQFQRSFSHGGLSSGLGIRPGTRKARWIRMLRRAISKTLRQGSIVAXXXXAPAGREPPEWVIAAAEKQNENTVNSVNFSSEGSFLEDDDSTTAAMEGHQNVQWCQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDFLLSNLYNAVHKELKGLLWDDGVDGNSNLGAKDSILTTGDDDTDACAGSVDHQNNMNDEDVNFDDHGLKRKKGSGRSSKNKYKGAAKKWEENQMRWKCEWDRERVELDRRLKEQLTESDGDGSMMVNHSDVLEALSRALRKTEEGFLEVADKMVMENPELALMGSCVLVXXXXLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKIRQDLERINEETMNDLESWDVDRSSLVPTLTSIQLTKDHSTNVDEEIQRIRKEHPDDPFALVNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGSSPYISCLPYLKHHRLGAKDKFLILCSDGLYQYLSNEEAVAEVEIFITLQPEGDPAQHLVEEVLFRAAKKAGLDFHQLLEIPQGDRRRYHDDVSIIVISLEGRIWRSCV 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60540g00004 710 PANTHER PROTEIN PHOSPHATASE 2C 247 699 IPR015655 GO:0004722|GO:0006470
Stsc60540g00004 710 CDD PP2Cc 404 701 IPR001932 -
Stsc60540g00004 710 Gene3D - 223 706 IPR036457 -
Stsc60540g00004 710 ProSiteProfiles PPM-type phosphatase domain profile. 250 701 IPR001932 -
Stsc60540g00004 710 Pfam Protein phosphatase 2C 438 651 IPR001932 -
Stsc60540g00004 710 FunFam probable protein phosphatase 2C 4 221 706 - -
Stsc60540g00004 710 MobiDBLite consensus disorder prediction 345 377 - -
Stsc60540g00004 710 SMART PP2C_4 250 699 IPR001932 -
Stsc60540g00004 710 SUPERFAMILY PP2C-like 264 702 IPR036457 -
Stsc60540g00004 710 MobiDBLite consensus disorder prediction 354 368 - -
Stsc60540g00004 710 MobiDBLite consensus disorder prediction 140 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60540g00004 Stsc-Chr60540 15859 18965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60540g00004 1 710 PP2C-type Phosphatase Gene Family AT2G28890 64.512 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60540g00004 - - aip:107629103 1301.19