Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60540g00002 ATGGAGCTCTTGCACCCTCTTCCTCCTCACCACCACGACTCCCCACTCGCACCAGAGCCCCTCCACCGTTACTCTCCTCCTCCCTCCACCTCCTCGCGCGTTGATTTCCATCCTGACGCCGCTGTAGACGAGAAGGTGCACGTGGCAGTTGGCAAGTCAGTGGGAAAAGGTGCCACCTTGCTTCAATGGGCTTTCTCAAACTTCACCAACCCACACATTCTTTTGCTTCATGTTCATCAACCTTCTCCTTTCATCCCTACACTATTAGGGAAGTTACCAGCATCTCAGGCTACTCCGGAAGTGGTTTCTGATTTTAGAAGAGCCGAAAAAGAACAGGCCATGAGCCTTTTGGACAATTACTTGAGAATTTGCCGTGCAGCTAAGGTTAAGGCAACCATTATGATGACCGAAGCTGATCAAGTCCAGAAGGGGATTGTTGATTTGGTTGTTGAGCATAACATTAGGAGGCTTGTTATTGGAGCAATACCCGAAGGTTGGATGAAAGTCAAAAGGAATTCCAGCAAAGCAAATTATGCTGCCAAAAATGCACCTCCATTCTGTAAAATATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAATACCTTGTTCTTTGTCTCCGTGTGAAATAACTGAAACCGAAGGCACTTTTGCATCTGAATCATCTACATCTACCAGTCGATCTCCCAAAAATTCTGCTCAGAGTCCTTCAGATACTCATTTGGAGGCTGAGGAAGAAAGAGTTAATGGTGAACATGTTGAAGTCAAACAAGAAGCTGATGAAACAGCAGATGAGGCTTTTGTTGAGCTACTGAAGTTGGAAGCCGAAGCCACTGATGCCATAAGGAAGGTCAAATTGTTTGAATCTGCTCATGCACAGGAAGTAAAGCTCAGACAAGAGGCACAGGATGAGTTGAGAACTACAGTAAAGGAGCAACAAAAGCTGTTGGATGAGAATGAAGAAATTGGTAGTGAGCTACAAAGAACCATGAGAAGTATTGCCATCTTAAACAGTTGTGCACAGGAAACAGACCGTAGGCGAGATGTAGCTGAAGATGAGCTATCGCTAATTCAAGCCTCCATCTCCACACTGTGGCATGAAAAACAGCAGATCAGGCGACAGAAAATGGAAGCCATCCGCTGGCTGGATCGGTGGAAAAGCCGTGGACAAGTTGGAGCTGTTCATGGTAATGGAACCGTAGGGTTTGCTGAGGAGTTACCTGAGATAGCAGAATTTTCATTATTGGATATTCAAAATGCCACATGCAATTTTTCTGAAAGCTTCAAAATTAAGGAGGGTGGATATGGTGCTATTTATAAGGGAGAAATGTTGGGTAGGACAGTTGCTATAAGAAAGCTCCATCCTCACAACTTGCAAGCACCTTCACAGTTTCACCAAGAGGTTCAAGTTCTTGGTAGTTTTCAGCACCCTCATCTGTTGACTTTGCTTGGTGTTTGCCCTGAAGCGTGGTCACTTGTATACGAGTACTTGCCCAATGGAAATATTCAAGACTTCCTTCTAAGAAAGGGCAACGTTTTCCCTTTAACATGGAATATCCGAGCACGATGGATTGCTGAAATTGCTAGTGCTCTCTGCTTTTTACATTCTTCCAAACCTGAAACTATTATTCATGTTGGTGAAGTACAAAGAGCCGTTACACGGGGAAGATTGTCCTCAATTTTAGACTCTTCGGTTGGTGAATGGCCTTTGACTGTGGCAACACGATTGGCTGACCTCGGATTACAGTGCTGCCAACAATATAGTAGAGACAGACCAGAGTTAACACCCTCTCTGGTAAGAGAACTGGAGCAGCTACATGTTTCGGAAGAGCGACCTGTGCCATCATTTTTCCTGTGTCCAATCCTTCAGGAAATAATGCATGACCCTCAAGTTGCAGCAGATGGATTCACTTATGAAAGGGATGCCATAACTGAATGGCTGGAAAATGGGCATGATACTTCTCCCATGACCAATCTGAAACTGAGTCACCTGTATCTTACTCCCAATCATGCACTTCGACTTGCTATCCAAGAATGGCTTTGCAAACCTTGA 2067 0.4456 MELLHPLPPHHHDSPLAPEPLHRYSPPPSTSSRVDFHPDAAVDEKVHVAVGKSVGKGATLLQWAFSNFTNPHILLLHVHQPSPFIPTLLGKLPASQATPEVVSDFRRAEKEQAMSLLDNYLRICRAAKVKATIMMTEADQVQKGIVDLVVEHNIRRLVIGAIPEGWMKVKRNSSKANYAAKNAPPFCKIWFIYKGKHIWTREASEIPCSLSPCEITETEGTFASESSTSTSRSPKNSAQSPSDTHLEAEEERVNGEHVEVKQEADETADEAFVELLKLEAEATDAIRKVKLFESAHAQEVKLRQEAQDELRTTVKEQQKLLDENEEIGSELQRTMRSIAILNSCAQETDRRRDVAEDELSLIQASISTLWHEKQQIRRQKMEAIRWLDRWKSRGQVGAVHGNGTVGFAEELPEIAEFSLLDIQNATCNFSESFKIKEGGYGAIYKGEMLGRTVAIRKLHPHNLQAPSQFHQEVQVLGSFQHPHLLTLLGVCPEAWSLVYEYLPNGNIQDFLLRKGNVFPLTWNIRARWIAEIASALCFLHSSKPETIIHVGEVQRAVTRGRLSSILDSSVGEWPLTVATRLADLGLQCCQQYSRDRPELTPSLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQVAADGFTYERDAITEWLENGHDTSPMTNLKLSHLYLTPNHALRLAIQEWLCKP 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60540g00002 688 MobiDBLite consensus disorder prediction 219 243 - -
Stsc60540g00002 688 Gene3D HUPs 39 185 IPR014729 -
Stsc60540g00002 688 MobiDBLite consensus disorder prediction 1 32 - -
Stsc60540g00002 688 PANTHER OS02G0152300 PROTEIN 46 549 - -
Stsc60540g00002 688 MobiDBLite consensus disorder prediction 219 266 - -
Stsc60540g00002 688 Coils Coil 303 323 - -
Stsc60540g00002 688 Pfam Protein tyrosine and serine/threonine kinase 434 543 IPR001245 GO:0004672|GO:0006468
Stsc60540g00002 688 SMART Ubox_2 621 684 IPR003613 GO:0004842|GO:0016567
Stsc60540g00002 688 Pfam U-box domain 618 687 IPR003613 GO:0004842|GO:0016567
Stsc60540g00002 688 CDD RING-Ubox_WDSUB1-like 619 674 - -
Stsc60540g00002 688 SUPERFAMILY Protein kinase-like (PK-like) 412 549 IPR011009 -
Stsc60540g00002 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 687 IPR013083 -
Stsc60540g00002 688 CDD STK_N 45 195 - -
Stsc60540g00002 688 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 59 183 - -
Stsc60540g00002 688 Gene3D Transferase(Phosphotransferase) domain 1 415 600 - -
Stsc60540g00002 688 SUPERFAMILY RING/U-box 615 687 - -
Stsc60540g00002 688 ProSiteProfiles U-box domain profile. 617 688 IPR003613 GO:0004842|GO:0016567
Stsc60540g00002 688 Coils Coil 261 281 - -
Stsc60540g00002 688 ProSiteProfiles Protein kinase domain profile. 429 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60540g00002 688 MobiDBLite consensus disorder prediction 244 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60540g00002 Stsc-Chr60540 5689 9986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60540g00002 552 685 U-box Gene Family AT2G45910 50.685 1.26e-38 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc60540g00002 PK_Tyr_Ser-Thr 1.2e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60540g00002 - - aip:107629106 1032.32