Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60539g00016 ATGGGTTGTGAGATGGAATTGGAGAGTGAGTGTATTGAGGACATGGAAATTGAAGTCCTACCTTCAATGTGGCCGGAAGATATCGGAACAGACGCTGGAAAACAGTTCAATATAGAGAAGCCTGGAGGGGATCAAGACATGTTGGAAGAAGTTACAATCATGGAGGAACCAACCATAGCCGATTTCCAGCGCTTAATGGAGCTAACTAACTACACAGACAAAGGCTCGTCGCAGTTGGCCTACTTGATGAAACATTGGGAGTATAAGCAGGCGAATGCGGTTCGCCTTCTAAGAGAAGAGCTTGACATCTTGAGCAAGCAGAGGCAGGAAGTTGAGCAAAGGAGGCTGGAGTTATTGCAAGAGAATCGGTTCGAGGAAGACTATGGAGGCGATAAGAGGCCGGTTTCTATTTTAGATGAAGTTTATTACACTTGGCAGGATTTGCCAAGCAGGAAGAGTGATGTTGTTGTGCAGAACAAGAGGATTGAGATTGAGGCTGAGTATGATACTGTTGTGTACTGGAAGCAGCGCGCGATGCAGCTGGAGAAACAGTTGGAGGCGAGTGTGCAGCGCGAGCAGACTCTTATGGATAAGTTGCAAGAAAGTATTGAGACTATTGAGAGGCAGAGTTCGCCGGTCGAGGAGTTGTCGCAGATTCTGAAGAGAGCTGATAATTTCTTGCATTTTATACTGCAAAATGCACCTGTTGTCATTGGTCACCAGGACAAAGAGTTGCGTTATCGCTTTATCTATAATCACTATCCAAGATTGCAAGAGGAGGACATCATAGGAAAAACAGATGTCGAAATCTTTACAGGTTCCGGTGTGAAAGAATCTCAAGATTTTAAGAGAGAAGTTATGGAGAAAGGATTGCCTGCGAAAAAGGAAATCACATTCGAGACGGATCTATTCGGGTCGAAGACATTCTTGATATATGTAGAGCCTGTGTTTAGCAAGGCAGGTGAAACAATAGGAATAAATTACATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCGAAGCTTCGCGAAGAGATCGCAGTTCAGAAAGCAAAGGAAACTGAACTGAATAAAACCATTCATATTACAGCTTCGGATGCAAGAAAGGTTCATTTTGTTGCTTCCCTTTTAACAGAGGAGACTATGAGAGCAAAGCAAATGCTGGCAACAATGTCTCATGAGATAAGATCACCTTTGTCCGGGGTTGTGAGCATGGCTGAAATTCTTTCCACGACGAAACTTGATCGTGAGCAGAGACAGCTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTCATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGTTAG 1359 0.4349 MGCEMELESECIEDMEIEVLPSMWPEDIGTDAGKQFNIEKPGGDQDMLEEVTIMEEPTIADFQRLMELTNYTDKGSSQLAYLMKHWEYKQANAVRLLREELDILSKQRQEVEQRRLELLQENRFEEDYGGDKRPVSILDEVYYTWQDLPSRKSDVVVQNKRIEIEAEYDTVVYWKQRAMQLEKQLEASVQREQTLMDKLQESIETIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHYPRLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETDLFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITASDARKVHFVASLLTEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMISSGDLVLQLINDILDLSKVESG 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60539g00016 452 CDD HisKA 389 448 IPR003661 GO:0000155|GO:0007165
Stsc60539g00016 452 FunFam Histidine kinase 5 214 349 - -
Stsc60539g00016 452 Coils Coil 343 363 - -
Stsc60539g00016 452 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 19 452 - -
Stsc60539g00016 452 FunFam Putative histidine kinase 5 377 452 - -
Stsc60539g00016 452 Coils Coil 182 209 - -
Stsc60539g00016 452 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 387 452 IPR036097 GO:0000155|GO:0007165
Stsc60539g00016 452 Pfam His Kinase A (phospho-acceptor) domain 389 452 IPR003661 GO:0000155|GO:0007165
Stsc60539g00016 452 Coils Coil 94 121 - -
Stsc60539g00016 452 Gene3D - 379 452 - -
Stsc60539g00016 452 ProSiteProfiles Histidine kinase domain profile. 394 452 IPR005467 -
Stsc60539g00016 452 Gene3D PAS domain 213 349 - -
Stsc60539g00016 452 SMART HisKA_10 387 452 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60539g00016 Stsc-Chr60539 79932 82058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60539g00016 1 452 Histidine Kinase Gene Family AT5G10720 66.814 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60539g00016 - - gmx:100801640 762.681