Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60539g00015 ATGTTTCAGGTTGAGTTAATGGGAGGACGCTTAACGGTGTCAAGCAAAGAACACGTTGGTTCTACCTTCACGTTCATACTTCCCTACAAAGTTTCAATACCTTCTTCTGATGAAAACTCCGACGACACCGACGAACTCTCCGATGTGGACAACAACGACGCCGTTTCCGACGATTTAACCGAAGGCTTCTTCCAATTCCAACCCCGCACTTTGGGATCTCTCTTCTCTTCCAATGGATCCACAAGGCGAACCTTGCACAAGTTCAACGGCTTTCCTTCTAATCCCTTCGCATTGCCTTCTCCGAACGGCGTCGTTTCGAAAGCAGTTACAAATTCCGTTGAAGATTCGTCTTCGGTTGTTGCTGATGCTTCAGATTTGACGGAATCAACGAGTTCATCGGATCATCGTGAAAATTCAGAGGGTGGAGCAGTCAAATTGCGGCAGGGTTGTGGTGATTCTTCGAAGGAAGTGAATAATGAATCTAGAAAGTCATCGAATAAGTGTGAGGGTTTGATTATGAAGAAGGAAGATGAGAATTCGCGATGCGTTAGTAGGTGCAGTGGATCGAGGGAAGAAGATAGTAGTAAAGAGTGTTGTAGATCGAAGCCGAAGATACTTCTTGTTGAAGATAACAAGATCAATGTGATGGTGACGCAGTCAATGATGAAGAGGTTAGGGTATAGTATGGATGTTGTTAACAATGGAGTTGAAGCTGTTAAAGCGGTTCAGCGTCACACTTATGACATCATTCTCATGGACGTTTTCATGCCAGTTATGAACGGTCTTCAGACGACGAAACTGATTCGATCTTACGAGGAAACTGGAAACTGGGATGCTGCAAAAAGTTCTGGAATTGAACAAATACAACAAATTTCAGATTATGAATGTTGTGTACCACCTAGAAAGCGGATCCACATTATCGCGATGACAGCAAACACAGTATCAGAGAGTGCAGAGGAATGTTATGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACTTTCCAAAAATTGAAAGAATGTCTTGAACAATACCTAAGGTGA 1047 0.4308 MFQVELMGGRLTVSSKEHVGSTFTFILPYKVSIPSSDENSDDTDELSDVDNNDAVSDDLTEGFFQFQPRTLGSLFSSNGSTRRTLHKFNGFPSNPFALPSPNGVVSKAVTNSVEDSSSVVADASDLTESTSSSDHRENSEGGAVKLRQGCGDSSKEVNNESRKSSNKCEGLIMKKEDENSRCVSRCSGSREEDSSKECCRSKPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVEAVKAVQRHTYDIILMDVFMPVMNGLQTTKLIRSYEETGNWDAAKSSGIEQIQQISDYECCVPPRKRIHIIAMTANTVSESAEECYANGMDSFVSKPVTFQKLKECLEQYLR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60539g00015 348 MobiDBLite consensus disorder prediction 114 128 - -
Stsc60539g00015 348 CDD REC_hyHK_CKI1_RcsC-like 205 343 - -
Stsc60539g00015 348 Gene3D - 195 348 - -
Stsc60539g00015 348 ProSiteProfiles Response regulatory domain profile. 204 347 IPR001789 GO:0000160
Stsc60539g00015 348 SMART REC_2 203 343 IPR001789 GO:0000160
Stsc60539g00015 348 PANTHER TWO-COMPONENT HISTIDINE KINASE 4 345 - -
Stsc60539g00015 348 Pfam Response regulator receiver domain 205 273 IPR001789 GO:0000160
Stsc60539g00015 348 SUPERFAMILY CheY-like 201 348 IPR011006 -
Stsc60539g00015 348 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4 29 IPR036890 -
Stsc60539g00015 348 MobiDBLite consensus disorder prediction 114 166 - -
Stsc60539g00015 348 FunFam Histidine kinase 5 197 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60539g00015 Stsc-Chr60539 76371 78886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60539g00015 4 348 Histidine Kinase Gene Family AT5G10720 47.309 1.03e-89 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc60539g00015 Response_reg 6.9e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60539g00015 - - cam:101512841 395.971