Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60539g00014 ATGAATGGTGACACTGAGGAGGAAAATCACTCAACTGAAACAACAGTGTGGATACGTTGTGATGTGTATGACACTGGAATCGGAATACCAGAAAAAGCTATACCCACTTTATTCAAAAGATACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGAGGCACAGGGCTGGGATTAGCAATATGCAAACAACTGGTTGAGTTAATGGGAGGACGCTTAACGGTGTCAAGCAAAGAACACGTTGGTTCTACCTTCACGTTCATACTTCCCTACAAAGTTTCAATACCTTCTTCTGATGAAAACTCCGACGACACCGACGAACTCTCCGATGTGGACAACAACGACGCCGTTTCCGACGATTTAACCGAAGGCTTCTTCCAATTCCAACCCCGCACTTTGGGATCTCTCTTCTCTTCCAATGGATCCACAAGGCGAACCTTGCACAAGTTCAACGGCTTTCCTTCTAATCCCTTCGCATTGCCTTCTCCGAACGGCGTCGTTTCGAAAGCAGTTACAAATTCCGTTGAAGATTCGTCTTCGGTTGTTGCTGATGCTTCAGATTTGACGGAATCAACGAGTTCATCGGATCATCGTGAAAATTCAGAGGGTGGAGCAGTCAAATTGCGGCAGGGTTGTGGTGATTCTTCGAAGGAAGTGAATAATGAATCTAGAAAGTCATCGAATAAGTGTGAGGGTTTGATTATGAAGAAGGAAGATGAGAATTCGCGATGCGTTAGTAGGTGCAGTGGATCGAGGGAAGAAGATAGTAGTAAAGAGTGTTGTAGATCGAAGCCGAAGATACTTCTTGTTGAAGATAACAAGATCAATGTGATGGTGACGCAGTCAATGATGAAGAGGTTAGGGTATAGTATGGATGTTGTTAACAATGGAGTTGAAGCTGTTAAAGCGGTTCAGCGTCACACTTATGACATCATTCTCATGGACGTTTTCATGCCAGTTATGAACGGTCTTCAGACGACGAAACTGATTCGATCTTACGAGGAAACTGGAAACTGGGATGCTGCAAAAAGTTCTGGAATTGAACAAATACAACAAATTTCAGATTATGAATGTTGTGTACCACCTAGAAAGCGGATCCACATTATCGCGATGACAGCAAACACAGTATCAGAGAGTGCAGAGGAATGTTATGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACTTTCCAAAAATTGAAAGAATGTCTTGAACAATACCTAAGGTGA 1233 0.4315 MNGDTEEENHSTETTVWIRCDVYDTGIGIPEKAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHVGSTFTFILPYKVSIPSSDENSDDTDELSDVDNNDAVSDDLTEGFFQFQPRTLGSLFSSNGSTRRTLHKFNGFPSNPFALPSPNGVVSKAVTNSVEDSSSVVADASDLTESTSSSDHRENSEGGAVKLRQGCGDSSKEVNNESRKSSNKCEGLIMKKEDENSRCVSRCSGSREEDSSKECCRSKPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVEAVKAVQRHTYDIILMDVFMPVMNGLQTTKLIRSYEETGNWDAAKSSGIEQIQQISDYECCVPPRKRIHIIAMTANTVSESAEECYANGMDSFVSKPVTFQKLKECLEQYLR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60539g00014 410 CDD HATPase_EvgS-ArcB-TorS-like 11 90 - -
Stsc60539g00014 410 PRINTS Bacterial sensor protein C-terminal signature 36 46 IPR004358 GO:0016310|GO:0016772
Stsc60539g00014 410 PRINTS Bacterial sensor protein C-terminal signature 18 32 IPR004358 GO:0016310|GO:0016772
Stsc60539g00014 410 PRINTS Bacterial sensor protein C-terminal signature 53 71 IPR004358 GO:0016310|GO:0016772
Stsc60539g00014 410 PRINTS Bacterial sensor protein C-terminal signature 77 90 IPR004358 GO:0016310|GO:0016772
Stsc60539g00014 410 SMART REC_2 265 405 IPR001789 GO:0000160
Stsc60539g00014 410 SMART HKATPase_4 3 93 IPR003594 -
Stsc60539g00014 410 Gene3D - 258 410 - -
Stsc60539g00014 410 ProSiteProfiles Histidine kinase domain profile. 22 93 IPR005467 -
Stsc60539g00014 410 SUPERFAMILY CheY-like 263 410 IPR011006 -
Stsc60539g00014 410 MobiDBLite consensus disorder prediction 176 190 - -
Stsc60539g00014 410 FunFam Histidine kinase 5 259 410 - -
Stsc60539g00014 410 CDD REC_hyHK_CKI1_RcsC-like 267 405 - -
Stsc60539g00014 410 ProSiteProfiles Response regulatory domain profile. 266 409 IPR001789 GO:0000160
Stsc60539g00014 410 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 14 93 IPR036890 -
Stsc60539g00014 410 Pfam Response regulator receiver domain 267 335 IPR001789 GO:0000160
Stsc60539g00014 410 Gene3D - 2 95 IPR036890 -
Stsc60539g00014 410 MobiDBLite consensus disorder prediction 176 230 - -
Stsc60539g00014 410 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 11 409 - -
Stsc60539g00014 410 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 16 91 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60539g00014 Stsc-Chr60539 76371 78886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60539g00014 1 409 Histidine Kinase Gene Family AT5G10720 52.267 9.97e-131 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc60539g00014 HATPase_c 1e-21 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60539g00014 - - cam:101512841 517.694