Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60538g00009 ATGGGTTCTGATCTGAAAGTTGAATTGTCCAAGAAAACTCCAATTTTTGGTATTAAGGTTTGGGAAGTAATTGGAATTGCGGTTGGATTGTTCATCATAGTGATCCTTTGTGTGCTCTCATTTTGCCTTAGTTCAAGGAAGAAGTCTAAGAAAGATAGAGATAACAAGGTTCCTGTTAGTCAAATACCTGCCGTGTCGAAGGAAATCAAGGAGGTGAGGGTTGAGCAAGTGCCGGCCAATGGATTCGTTCCGCGCGATGGGATACTCCTCACGATCCATGATAAGTCCAGTGACAGAGAATCAGACAAAGTTATGGTTCACTTGGGTGTGGGGAAGATGAAGCATGGGGATAGTGGCAGCCACTCAGGTTCATTTCATCACTTGGAGAAAGATGGATATGGATCACAGTCAGGGGAAGAAGGTAGCTCCGGCACGTTTAAAGGATACAATCCATCTTCTTCTTCATACCCGATAACAGCGCCTTCGCCTCTGTCTGGCCTTCCAGAATTCTCTCATTTGGGTTGGGGTCACTGGTTTACATTGAGGGATCTTGAACTCGCCACAAACCGTTTCTCGAAGGAGAATGTCCTTGGCGAAGGTGGCTATGGAGTTGTTTATAGGGGACAATTGATAAATGGGACTTCAGTGGCAGTCAAGAGGATACTCAATAACATTGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAAGCTATTGGCCATGTCCGACATAAAAATTTGGTTCGTCTTTTGGGGTATTGCATTGAGGGGACTCACAGGATATTAGTGTATGAGTATGTTAACAATGGAAACTTAGAGCAATGGCTTCATGGAGCAATGCGTCATCATGGGTATCTTACCTGGGAAGCGCGTATCAAGATTCTTCTGGGCACGGCTAAAGCGCTTGCTTATTTGCATGAAGCAATTGAACCGAAGGTGGTTCACCGAGATATCAAGTCGAGCAACATATTAATTGACGATGACTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTACTGGGCGCTGGGAAGAGTCATGTTACAACAAGAGTTATGGGAACCTTTGGATATGTGGCTCCTGAATATGCGAATACTGGCCTTTTAAATGAAAAGAGTGATGTGTATAGTTTTGGTGTTGTGCTACTCGAAGCAATTACCGGAAGAGATCCAGTTGACTATGGCCGTCCACCCCAGGAAGTTAATCTGGTTGACTGGTTGAAGATGATGGTTGGAAACAGACGATCGGAAGAAGTCGTAGACCCAAACATTGAGGTGAAGCCATCAACCAGGGCTTTGAAACGGGCTCTCTTAACAGCTTTAAGATGCGTGGATCCAGATCATGTCAAAAGACCCAAGATGGGCCAAGTCGTACGAATGCTCGAGTCAGAGGAGTACCCTTTACCGAGAGAGGACCGAAGGCAGCGAAGAAATGGTGGAAATAACTCCGAAATCGAATCCCTGAAGGATCATTCGGACACAGACAGGAGCGAGATTCAGGGTTCTGTATCAGAGAGTGGAGGGTAG 1530 0.4542 MGSDLKVELSKKTPIFGIKVWEVIGIAVGLFIIVILCVLSFCLSSRKKSKKDRDNKVPVSQIPAVSKEIKEVRVEQVPANGFVPRDGILLTIHDKSSDRESDKVMVHLGVGKMKHGDSGSHSGSFHHLEKDGYGSQSGEEGSSGTFKGYNPSSSSYPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGVVYRGQLINGTSVAVKRILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRILVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPPQEVNLVDWLKMMVGNRRSEEVVDPNIEVKPSTRALKRALLTALRCVDPDHVKRPKMGQVVRMLESEEYPLPREDRRQRRNGGNNSEIESLKDHSDTDRSEIQGSVSESGG 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60538g00009 509 CDD STKc_IRAK 197 463 - -
Stsc60538g00009 509 ProSiteProfiles Protein kinase domain profile. 191 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60538g00009 509 Gene3D Transferase(Phosphotransferase) domain 1 267 477 - -
Stsc60538g00009 509 Gene3D Phosphorylase Kinase; domain 1 173 266 - -
Stsc60538g00009 509 MobiDBLite consensus disorder prediction 119 134 - -
Stsc60538g00009 509 ProSitePatterns Protein kinases ATP-binding region signature. 197 219 IPR017441 GO:0005524
Stsc60538g00009 509 Pfam Protein kinase domain 192 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60538g00009 509 SMART serkin_6 191 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60538g00009 509 FunFam Putative receptor-like serine/threonine-protein kinase 267 478 - -
Stsc60538g00009 509 PANTHER OS01G0323000 PROTEIN 5 491 - -
Stsc60538g00009 509 MobiDBLite consensus disorder prediction 466 499 - -
Stsc60538g00009 509 FunFam Putative receptor-like protein kinase 173 266 - -
Stsc60538g00009 509 MobiDBLite consensus disorder prediction 466 509 - -
Stsc60538g00009 509 MobiDBLite consensus disorder prediction 115 152 - -
Stsc60538g00009 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Stsc60538g00009 509 MobiDBLite consensus disorder prediction 136 152 - -
Stsc60538g00009 509 SUPERFAMILY Protein kinase-like (PK-like) 175 470 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60538g00009 Stsc-Chr60538 67319 71546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60538g00009 132 465 Trihelix Transcription Factor Family AT1G70460 48.083 1.40e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Stsc60538g00009 Pkinase 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60538g00009 - - ccaj:109788307 854.744