Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60538g00002 ATGCCGGCAAGAAAATTCTACTGTGATTACTGCGACAAGCAGTTTCCGGACTCGCCGGCCGACCGGAAGCGGCATGAGCGAGGCATTCAGCATCAACAAGCCAAAGCTCGCTGGTATGATTCATTCAAACTTGAACAGCAACAGTTTCCTTCTAATGCAGCACTACCCCAAGGAATGCCTCAGCAACCTCTTTGCTATAACTTTGTCAACACTGGATTTTGTGGTTATGGTAACTCATGCAAATATCTTCATCCCAATGCCAACAATGCACCACAGCCATCAATGATAAGTGCGCATACTCTGTCGGGAAATGTAGTACAAGATAGGACGGGGTTGTCATGGGATAATTTGCCTCCATCACTGCATCCCCCACCAGAAGCTGGATATCCTCCTCTTCCTTTTGTGGATTGGGGATAG 417 0.4748 MPARKFYCDYCDKQFPDSPADRKRHERGIQHQQAKARWYDSFKLEQQQFPSNAALPQGMPQQPLCYNFVNTGFCGYGNSCKYLHPNANNAPQPSMISAHTLSGNVVQDRTGLSWDNLPPSLHPPPEAGYPPLPFVDWG 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60538g00002 138 SMART c3hfinal6 59 86 IPR000571 GO:0046872
Stsc60538g00002 138 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 61 85 IPR000571 GO:0046872
Stsc60538g00002 138 SUPERFAMILY beta-beta-alpha zinc fingers 4 51 IPR036236 -
Stsc60538g00002 138 Gene3D Classic Zinc Finger 3 52 - -
Stsc60538g00002 138 ProSiteProfiles Zinc finger C3H1-type profile. 59 87 IPR000571 GO:0046872
Stsc60538g00002 138 Pfam U1 zinc finger 5 39 IPR013085 GO:0008270
Stsc60538g00002 138 Gene3D - 53 110 - -
Stsc60538g00002 138 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
Stsc60538g00002 138 PANTHER NUCLEASE-RELATED 1 138 - -
Stsc60538g00002 138 SUPERFAMILY CCCH zinc finger 60 86 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60538g00002 Stsc-Chr60538 5790 7661 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60538g00002 15 101 C3H Transcription Factor Family AT1G04990 32.222 5.65e-06 42.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc60538g00002 zf-U1 6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60538g00002 K13152 - gmx:100527203 170.629