LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60537g00012	ATGCGTCAAGCAGGGAACAAGTTCTGCGCTGATTGTGGATCATCAGAGCCAAAATGGGCGTCTTCAAGTCTTGGAGTATTTATTTGCATCCAGTGTTCTGGCATACATAGAAGCCTAGGAGTCCATATATCGAAGGTTCTATCGCTGAAACTAGATGAATGGACAGACGAACAAGTTGATGAATTGGTGAGACTGGGTGGAAATACAGTAATCAATAAGAGGTATGAAGCTTGTATCCCAAGTAACATTAAAAAACCAAAACCAAATTCTTCGATCGAGGAGCGTGCAGATTATATCAGAAGAAAATATGAGCTGCTACAGTTTTCGGATTCCGAGAAAAATTTGCAATGCACCTTTCCACCATCTCAACAAAGATATTTAACATGCTCCCCTAGCAACTCGTCTTCCTATGGGTTTCCTCTGGACAAAAGACATTACGAAAAGCAAACAACAAAAGCTCGTATTGGGACCGCACTCCGACACAGTTGGGGAAGGAAGGAATCAGAGCATAAGATTTCAAAGAAAAGTCACTCAGTGGCAGGTATGATTCAATTCGTTGGGTTGATCAAGGTTAATGTCGTTAAAGGCACTAACCTGGCTATCCGGGATGTCGTGACTAGTGACCCTTATGTCATGCTTTCTCTTGGTCACCAATTGGTGAAGACTCGTGTCATAAAGAACAATTTGAATCCAGTTTGGAACGAAAGCTTAATGCTCTCGATTCCGGAGAACGTTCCTCCTCTTAAAGTGGTTGTGTATGACAAGGATACTTTCTCGACCGATGATTTTATGGGCGAGGCTGAAATAGACATTCAACCTCTAGTAACAGCCGCAAAGGCATACGAGAAATCTTCGATCAACGAGTCAATGCAGCTCGGAAAATGGGTAGCAAGCGGCGAAAACACTCTTGTCAAAGATGGTATCATTACCCTGGAAGAAGGGAAGGTCAAACAAGAGGTACAATTGAGGTTACAGAAGGTGGAGAGAGGAGTTTTGGACATTGAACTTGAATGTCTTCCTCTCACTCAATAG	1032	0.4273	MRQAGNKFCADCGSSEPKWASSSLGVFICIQCSGIHRSLGVHISKVLSLKLDEWTDEQVDELVRLGGNTVINKRYEACIPSNIKKPKPNSSIEERADYIRRKYELLQFSDSEKNLQCTFPPSQQRYLTCSPSNSSSYGFPLDKRHYEKQTTKARIGTALRHSWGRKESEHKISKKSHSVAGMIQFVGLIKVNVVKGTNLAIRDVVTSDPYVMLSLGHQLVKTRVIKNNLNPVWNESLMLSIPENVPPLKVVVYDKDTFSTDDFMGEAEIDIQPLVTAAKAYEKSSINESMQLGKWVASGENTLVKDGIITLEEGKVKQEVQLRLQKVERGVLDIELECLPLTQ	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60537g00012	343	CDD	C2_ArfGAP	186	330	-	-
	Stsc60537g00012	343	PRINTS	HIV Rev interacting protein signature	46	67	IPR001164	GO:0005096
	Stsc60537g00012	343	PRINTS	HIV Rev interacting protein signature	25	42	IPR001164	GO:0005096
	Stsc60537g00012	343	PRINTS	HIV Rev interacting protein signature	6	25	IPR001164	GO:0005096
	Stsc60537g00012	343	SUPERFAMILY	ArfGap/RecO-like zinc finger	2	109	IPR037278	-
	Stsc60537g00012	343	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	185	278	IPR035892	-
	Stsc60537g00012	343	ProSiteProfiles	C2 domain profile.	166	285	IPR000008	-
	Stsc60537g00012	343	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	1	343	IPR044518	GO:0005096\|GO:0005543
	Stsc60537g00012	343	SMART	arf_gap_3	1	116	IPR001164	GO:0005096
	Stsc60537g00012	343	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	1	116	IPR001164	GO:0005096
	Stsc60537g00012	343	Gene3D	C2 domain	185	336	IPR035892	-
	Stsc60537g00012	343	FunFam	stromal membrane-associated protein 1 isoform X1	1	114	-	-
	Stsc60537g00012	343	Pfam	C2 domain	188	277	IPR000008	-
	Stsc60537g00012	343	Pfam	Putative GTPase activating protein for Arf	2	110	IPR001164	GO:0005096
	Stsc60537g00012	343	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	185	343	-	-
	Stsc60537g00012	343	CDD	ArfGap	1	103	-	-
	Stsc60537g00012	343	Gene3D	Arf GTPase activating protein	1	117	IPR038508	-
	Stsc60537g00012	343	SMART	C2_3c	188	283	IPR000008	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60537g00012	Stsc-Chr60537	82243	84729	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60537g00012	1	343	C2H2 Transcription Factor Family	AT4G21160	46.356	7.80e-113	329

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60537g00012	K12486		-	gmx:100799376	553.132