Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60537g00005 ATGTCTGCGAACGATTCCTTCGCGAACCACAAGCTATGCGGTTTCCTCTGTGCTGTTCTCAGAGTCACTCCTCCAATTCAATCTCACTCATCCGGTTCCTCTTCTTTCATCAACGATCAATGCGAGATCTTTGGCGACGGTTTCCGGTCCCAAACTGGTCACGTTTTGTGTCCGTTGAGGACTGGCTCCGATTCAGGACAATGCGAAGGAGGAGAGAGTAGCGGCGGCGGATCGTCGTCGAAAGGGAGGAGGATGAGTAAGGTTGGGATGGTGAATGGGAGCATTAGCGTGGTTCACCAGCTTCATGCTCTGGTGAGCCGCAACTGCGTGAAGAGTGATGCTCGAGTGGTGTGGGTGGAGGTCGGAGAAGGGGAGGAGGGGAGGGCGGTGGTCCTCGTCGATGTCTACGTCACAATTGAGCTCTGGAGTGGCTGGCAGTTCCCGCGGTCGGGGGCGGTTGCCGGCGCATTCTTTCGCCACCTGAGCTGTGATTGGGACAAGAGAAGTTCAATGCTTTCTGATCCAGACTATTTTAGGAAGACTTTTGGGACAAGTGACAGCATCTGGAACCTTTCTGACTGTCATGTACTTGGTTGCAAGCTCCATTATGGTGTGAGTGATTCTTCAAAGAAAAGACTATTTGAACTTCATGAAATATTTAAGATGGTACCTGGTGTTGGAAAGCAGCAGAAGTCTAATAGGTCAAGGATAGTACCAATTGATAACGCTTTGGAATCTGGGATCTGGGAGATATCTGATGATATTTTAACCAAAATTTTAGCTTCCCTGGGTCCAATGGACCTCACTAGGGTATCTGCAACGTGTCAACATCTCAGATCCTTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTCTTTCCTCATCAGCAGACTGCGGTTGAGTGGATGTTGCATCGTGAGCGAAATTTTGAACAGTTGCCACATCCCTTATATATTGCTCTCTCAACTGAAGATGGCTTTAGTTTCCATGTAAATACTGTATCTGGGGAAATAGTTTTTGGGGAAACTCCCACCATCAGAGATTTCCGTGGAGGGATGTTCTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAACTCTTTCTCTTATTGTGAAGACACAAGGCACTCTGGCAGATCCACCAGATGGGGCAGAAGTAATCTGGTGTCAACATAATGGTAAACAGAAATGTGGTTATTATGAGATCAGTGGTAATAATATAACTGGTTATTGTATGTTGGGTAAGAGGGATATGGGTCAAGATGCTAGTAAGAATAATGAGAACCATGACTCTTCCTCAAAAAGAGCCAGATTGATGAATCCTGATGAGAAAATTACTACACAAAATGGCTTATTTTCTACGGAAGCTATGAAGTCACCTGTACAAGAATCATTTGAAGAGTCGGTATCTGCCGTTCGAAGCACTAGGAGTCTTAGTTGCATCAAGAAAAATCTGCATCTCTCCTTTGAAGATGAAGATCTGGTTTTCAAGGAAAGAAAAGTTGGCACGAGATCACATAAAACAAAGCATGCATCAGATATTTCATCATCTGTATCACCACATAAGCTAGTGAATGCTTCAAATGGATGTGGGAAAAATTACAAGTTGCCTGGGAAGCCTATAGTTGATTGTTTAGAGTACAATGATACGTGGATTCAGTGTGATGCGTGTCACAAATGGCGAAAGCTTGCAGATATTAGTATGGCTAATTCTACTGCAGCCTGGTTTTGTAGTATGAACACTGACCCTTCATATCAGAGTTGTAATGTCCCAGAACAACATTTTCAGAACAGCTGTAAGATAACATACTTACCAGGATTTCACTTGAAAGGAACTCCTGGGGGTTTGGAACAAAATGTTTCATTTTTCATTAATGTGCTTAAGGAGCACTATACATTGATCAATTCTCAGTCAAAGAAGGCCCTGACTTGGTTGGTTAAACTTTCAGCGGATACGATTGCAGGAATGGAAACAAATGGCATACGGGGGCCCATTTTGAACTCCTGTAGTACATCTAATGGATATTTTAATGCATTTCACAAAATATTCCAAGCATTTGGCCTTGTAAAAAGAGTAGATAAAGGTGTATGCAGGTGGAATTACCCACAAAATCTTAACAATTTGACTTTTGATGTGAAAGCCCTTGGCATGGCTCTTCGTGAGCCATTAGATTTTGTGAGGCTATACCTGTCAAGAGCAACCCTGATAGTTGTTCCAGCAAACCTGGTTGATCATTGGAAAACACAAATAGAGAAGCATGTAACTCCTGGTCAATTGCGGGTTTATGTTTGCATTGATCAGCGAAAGCCATCTGCACATTGTTTAGCTTGGGATTATGATGTTGTTATAACTACCTTTAGCCGTTTGAGTGCAGAGTGGAACCCACGTAAGAGGAGTGTTTTGATGCAAGTACACTGGTTTAGGATAATTTTAGATGAAGGTCACACTCTTGGCTCTAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCAATGATGGCTGCAAATCGTTGGATACTAACAGGTACTCCAACACCTAATACCCCTAACAGTCAACTCCCACATCTACAACCTCTGCTTAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCAGAAGTCATGGGAAGCTGGCATCCTTAGGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTCTCGTCTGCTGCATTTAATTCAGAAGTGCATGATTAGTGCAAGAAAGATAGACTTGCAAAACATTCCACCGCGCATTAAGAAAGTTGTTTTTATAGATTTCAGTGAGGAACATGCTAGAAGTTACAATGAATTGGAAACAATGGATATTTTGACACAAAGTGGCCTTGATCCTACTTCAGCGGAGTATAGTTCCATAAGATATAGTCTTCTATTTGGTGGTAATTGTGTCAGATGCAAGGAGTGGTGCCGCCTTCCTCTCATTACACCTTGTCGCCATCTGTTGTGCCTTGATTGCGTTTCTTTAGACAGTATGAAGTGTACATATCCTGGATGTGGTAAACCATATGAAATACAGACTCCTGATACATTGGCCCGGCCAGAAAATCCTAACCCAAAGTGGCCTGTGCCCAAAGATCTTATTGAGCTGCAGCCTTCATATAAGCAGGATGACTGGGATCCTGATTGGCAATCAACTTCTAGTAGTAAAGTCTCCTATCTTGTCCAGAGGTTAAAAGCTTTGCAAGAAAGCAATGAAAAAATGGGTTTCTTCTGCAAAGACAATAGCAATCAGAAGCTTGATACTGAGAACAGCTTCCCTTTGCATCATATACATGTCGTTGAACAGCAGTTGACCGTTGCTGGTATCAAATTTGCTGGAATGTATAGCCCAATGCATTCAAGCAGCAAGAAGAAGGCACTAGCCACATTCCAGCATGATTCAAGTTGTATGGCACTTGTGATGGATGGAAGCGCTGCATTGGGGCTTGACCTGAGTTTTGTTACGCATGTTTTTCTGATGGAGCCAATTTGGGACAGAAGTATGGAGGAACAAGTAATTAGTCGTGCCCATCGCATGGGTGCTTCTCGTCCTATCCATGTGGAAACTTTGGCCATGCGTGGTACCATTGAAGAGCAAATGATGAAGTTTTTACAGGATGCTGATAAATGTAGAAGATTTCCTAGTCAAGTTGCTCCCAAATATGTAGATGATAGTGGGGGACGAGGACATCGTTCACTACATGATTTTGCTGAAAGTAGTTATCTACTCAAACTTAGATTTGTGCATACTGATCCAGAAACCCTAAAAGGTTTGTGCAAAGTTGTTCTTCCCGAAATTTTGAAGTGA 3807 0.4297 MSANDSFANHKLCGFLCAVLRVTPPIQSHSSGSSSFINDQCEIFGDGFRSQTGHVLCPLRTGSDSGQCEGGESSGGGSSSKGRRMSKVGMVNGSISVVHQLHALVSRNCVKSDARVVWVEVGEGEEGRAVVLVDVYVTIELWSGWQFPRSGAVAGAFFRHLSCDWDKRSSMLSDPDYFRKTFGTSDSIWNLSDCHVLGCKLHYGVSDSSKKRLFELHEIFKMVPGVGKQQKSNRSRIVPIDNALESGIWEISDDILTKILASLGPMDLTRVSATCQHLRSLAASVMPCTKLNLFPHQQTAVEWMLHRERNFEQLPHPLYIALSTEDGFSFHVNTVSGEIVFGETPTIRDFRGGMFCDEPGLGKTVTTLSLIVKTQGTLADPPDGAEVIWCQHNGKQKCGYYEISGNNITGYCMLGKRDMGQDASKNNENHDSSSKRARLMNPDEKITTQNGLFSTEAMKSPVQESFEESVSAVRSTRSLSCIKKNLHLSFEDEDLVFKERKVGTRSHKTKHASDISSSVSPHKLVNASNGCGKNYKLPGKPIVDCLEYNDTWIQCDACHKWRKLADISMANSTAAWFCSMNTDPSYQSCNVPEQHFQNSCKITYLPGFHLKGTPGGLEQNVSFFINVLKEHYTLINSQSKKALTWLVKLSADTIAGMETNGIRGPILNSCSTSNGYFNAFHKIFQAFGLVKRVDKGVCRWNYPQNLNNLTFDVKALGMALREPLDFVRLYLSRATLIVVPANLVDHWKTQIEKHVTPGQLRVYVCIDQRKPSAHCLAWDYDVVITTFSRLSAEWNPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISMMAANRWILTGTPTPNTPNSQLPHLQPLLRFLHEEAYGLNQKSWEAGILRPFEAEMEEGRSRLLHLIQKCMISARKIDLQNIPPRIKKVVFIDFSEEHARSYNELETMDILTQSGLDPTSAEYSSIRYSLLFGGNCVRCKEWCRLPLITPCRHLLCLDCVSLDSMKCTYPGCGKPYEIQTPDTLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTSSSKVSYLVQRLKALQESNEKMGFFCKDNSNQKLDTENSFPLHHIHVVEQQLTVAGIKFAGMYSPMHSSSKKKALATFQHDSSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMMKFLQDADKCRRFPSQVAPKYVDDSGGRGHRSLHDFAESSYLLKLRFVHTDPETLKGLCKVVLPEILK 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60537g00005 1268 ProSitePatterns Zinc finger RING-type signature. 984 993 IPR017907 -
Stsc60537g00005 1268 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 735 864 IPR014001 -
Stsc60537g00005 1268 Pfam Helicase conserved C-terminal domain 1056 1180 IPR001650 -
Stsc60537g00005 1268 SMART ultradead3 289 875 IPR014001 -
Stsc60537g00005 1268 Gene3D - 718 908 IPR038718 -
Stsc60537g00005 1268 SMART fbox_2 251 291 IPR001810 GO:0005515
Stsc60537g00005 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 374 IPR027417 -
Stsc60537g00005 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 732 904 IPR027417 -
Stsc60537g00005 1268 Gene3D - 1003 1213 IPR027417 -
Stsc60537g00005 1268 Pfam CW-type Zinc Finger 551 594 IPR011124 GO:0008270
Stsc60537g00005 1268 MobiDBLite consensus disorder prediction 63 84 - -
Stsc60537g00005 1268 CDD F-box_SF 250 282 - -
Stsc60537g00005 1268 Pfam F-box domain 251 285 IPR001810 GO:0005515
Stsc60537g00005 1268 CDD SF2_C_SNF 1054 1190 - -
Stsc60537g00005 1268 Gene3D - 546 596 - -
Stsc60537g00005 1268 MobiDBLite consensus disorder prediction 66 81 - -
Stsc60537g00005 1268 SMART helicmild6 1098 1180 IPR001650 -
Stsc60537g00005 1268 CDD DEXDc_SHPRH-like 728 905 - -
Stsc60537g00005 1268 ProSiteProfiles Zinc finger CW-type profile. 546 597 IPR011124 GO:0008270
Stsc60537g00005 1268 Pfam SNF2-related domain 296 943 IPR000330 GO:0005524|GO:0140658
Stsc60537g00005 1268 SUPERFAMILY F-box domain 247 284 IPR036047 GO:0005515
Stsc60537g00005 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 806 1206 IPR027417 -
Stsc60537g00005 1268 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1059 1226 IPR001650 -
Stsc60537g00005 1268 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 108 940 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60537g00005 Stsc-Chr60537 29962 36915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60537g00005 734 1200 RAD5 or RAD16-like Gene Family AT5G22750 25.730 5.25e-41 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc60537g00005 SNF2_N 6.1e-96 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60537g00005 - - gmx:100803102 1814.28