Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60537g00004 ATGGGTTTGGCTGCAGAAGCACAGTTTCATGTTCTGGCTGTTGATGATAGTCTTATTGACAGAATGTTGATTGAAAGACTCCTCAAAACTTCTTCATTTCATGTTACTGCGGTGGACTCAGGAAGTAAGGCTTTAAAATTTCTTGGATTGGTTGAAGAAGAGCAGAGGAATGAAGAGCCTTCCTTTGTTGCTCCAAAAACTCATAATCAGGATGTAGATGTGAACCTGATCATAACAGATTATTGTATGCCAGAAATGACTGGCTATGATCTTCTCAGAAAAATCAAGGAATCAAAATCTCTTAAAGATATACCAGTTGTGATTATGTCATCAGAGAATGTCCCATCAAGGATCAATAGATGCTTAGAAGAAGGAGCTGAAGAATTCTTTTTGAAACCAGTTCAACAGTCAGATGTGAATAAGCTGAGGCCCCATTTGCTGAAATCAAAAGTTAAGGAAGTGAGAGAAGAAGACCAAGTCATCAACCTCAGTAGAAACGACATAAAAGAAATTTTAGCCTAA 522 0.3774 MGLAAEAQFHVLAVDDSLIDRMLIERLLKTSSFHVTAVDSGSKALKFLGLVEEEQRNEEPSFVAPKTHNQDVDVNLIITDYCMPEMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQSDVNKLRPHLLKSKVKEVREEDQVINLSRNDIKEILA 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60537g00004 173 ProSiteProfiles Response regulatory domain profile. 10 147 IPR001789 GO:0000160
Stsc60537g00004 173 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 151 IPR045279 GO:0009736
Stsc60537g00004 173 Gene3D - 10 171 - -
Stsc60537g00004 173 Pfam Response regulator receiver domain 11 139 IPR001789 GO:0000160
Stsc60537g00004 173 SMART REC_2 9 143 IPR001789 GO:0000160
Stsc60537g00004 173 SUPERFAMILY CheY-like 9 145 IPR011006 -
Stsc60537g00004 173 CDD REC_typeA_ARR 11 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60537g00004 Stsc-Chr60537 27899 29188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60537g00004 1 158 Response Regulator Gene Family AT3G57040 67.089 2.40e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc60537g00004 Response_reg 1.7e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60537g00004 K14492 - gmx:100818762 272.322