Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60536g00023 ATGATGGGTCCTTCTACACTCTCTTTTGTTATGGTTCAACACTCTTCCACGCATTCTTCATCATCATCATCATCAGGTGGTTGTAGTAAGAGAAAACAGAACGTGCAGCTGAGAAATCCTTTTGCTTCAGTTAGCATGGGAGAGGAGAAGCCATTTGATTTCTTACGCACTTTATTTGAGGGCATTATCGCTGGAGGTACGGCCGGAGTTGTAGTTGAAACGGCTTTATACCCCATTGACACTATAAAAACACGTTTGCAGGCTGCTCGGGGAGGAGAAAAACTAATACTTAAGGGACTTTATTCTGGATTGGCAGGGAACCTGGCTGGTGTTTTACCGGCATCAGCTTTATTCGTTGGAGTTTATGAACCTATAAAGCAGAAACTGTTGAGGATGTTTCCTGAAAATCTGAGTGCCTTTGCTCATCTGACTGCAGGTGCCATAGGGGGCATTGCCGCTTCACTGATTCGCGTTCCAACAGAGGTTGTTAAGCAACGAATGCAAACTGGACAGTTTACTTCAGCCGCTGGTGCTGTCCGCTTCATTGCTGCTAAGGAAGGTTTCAAAGGACTTTATGCTGGGTATGGATCCTTTTTATTGCGGGATTTGCCTTTTGATGCTATTCAGTTTTGCATCTATGAGCAGATTAGGATGGGTTATATGCTTGCGGCCCGAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCATTTGCAGGTGCACTAACTGGAGCTATAACAACTCCCCTTGATGTCATCAAGACAAGATTAATGGTTCAGGGATCTGCAAACCAATATAATGGAATCGTAGATTGTGTTCAAACAATTATCAAGGAAGAAGGACCTAGTGCGCTTTTGAAGGGTATTGGGCCTCGAGTACTATGGATAGGCATCGGTGGTTCGATATTCTTTGGTGTTCTTGAGGGTACAAAACGTTTTCTGGCTGAGAGGCGTCCTACACCTTCAGAGTCAGAAAAGGTTAAATAA 990 0.4374 MMGPSTLSFVMVQHSSTHSSSSSSSGGCSKRKQNVQLRNPFASVSMGEEKPFDFLRTLFEGIIAGGTAGVVVETALYPIDTIKTRLQAARGGEKLILKGLYSGLAGNLAGVLPASALFVGVYEPIKQKLLRMFPENLSAFAHLTAGAIGGIAASLIRVPTEVVKQRMQTGQFTSAAGAVRFIAAKEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQIRMGYMLAARRNLNDPENAIIGAFAGALTGAITTPLDVIKTRLMVQGSANQYNGIVDCVQTIIKEEGPSALLKGIGPRVLWIGIGGSIFFGVLEGTKRFLAERRPTPSESEKVK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60536g00023 329 Gene3D Mitochondrial carrier domain 57 326 IPR023395 -
Stsc60536g00023 329 PRINTS Mitochondrial carrier protein signature 61 74 IPR002067 GO:0055085
Stsc60536g00023 329 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Stsc60536g00023 329 PRINTS Mitochondrial carrier protein signature 192 210 IPR002067 GO:0055085
Stsc60536g00023 329 PRINTS Mitochondrial carrier protein signature 74 88 IPR002067 GO:0055085
Stsc60536g00023 329 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 30 323 - -
Stsc60536g00023 329 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 60 327 - -
Stsc60536g00023 329 Pfam Mitochondrial carrier protein 58 92 IPR018108 -
Stsc60536g00023 329 Pfam Mitochondrial carrier protein 232 317 IPR018108 -
Stsc60536g00023 329 Pfam Mitochondrial carrier protein 137 219 IPR018108 -
Stsc60536g00023 329 SUPERFAMILY Mitochondrial carrier 59 309 IPR023395 -
Stsc60536g00023 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 137 219 IPR018108 -
Stsc60536g00023 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 56 128 IPR018108 -
Stsc60536g00023 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 232 314 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60536g00023 Stsc-Chr60536 94768 99966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60536g00023 135 327 Chloroplast and Mitochondria Gene Families AT1G07030 29.293 1.12e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60536g00023 K15111 - gmx:100811130 525.783