Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60536g00009 ATGGCGCCGAAGCAGAGAACAGCAAGGAAGGTGAGCAGGAACCCCGAACTCATCAGGGGAATCGGAAAGTACTCCAGGTCCCAGATGTACCACAAGAGAGGTCTCTGGGCCATCAAGGCCAAAAACGGCGGCGTTTTGCCTCGCCACGATCCCAAACCTAAGCCTCAAGCACCTGCTCAAAAGTCCCCCAAATTCTATCCTGCTGATGACGTCAAGAAACCCCTCGTTAACAAGCACAAGGCCAAACCTACCAAGCTCAGGGCTAGCATTACTCCTGGAACAGTGCTCATTCTTCTAGCTGGTAGATTTAAGGGAAAGAGGGTAGTGTTCCTGAAGCAGCTTCCTTCTGGCTTGCTTCTTGTCACTGGCCCCTTCAAAATCAATGGAGTGCCTTTGAGGCGCGTGAACCAATCCTACGTCATTGGTACATCAACCAAAGTGGATGTCTCAGGTGTTAATGTGGATAAATTTGATGATAAATACTTTGCAAAGGAAGCTGAGAAGAAGAAGAAAAAGGAAGAGGGAGAGTTCTTTGAGTCAGAGAAAGAGGAGAAGAAAGTGCTTCCCCAGGAGAAGAAAGATGACCAGAAAACTGTGGACTCTGCTTTGATAAAAGCCATTGAAAGCGTTCCAGATTTGAAGTCATATATTGGTGCTAGGTTTTCCCTCAAGCAAGGCGTGAAGCCCCATGAGCTAGTCTTCTAG 705 0.478 MAPKQRTARKVSRNPELIRGIGKYSRSQMYHKRGLWAIKAKNGGVLPRHDPKPKPQAPAQKSPKFYPADDVKKPLVNKHKAKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSGVNVDKFDDKYFAKEAEKKKKKEEGEFFESEKEEKKVLPQEKKDDQKTVDSALIKAIESVPDLKSYIGARFSLKQGVKPHELVF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60536g00009 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Stsc60536g00009 234 SUPERFAMILY Translation proteins SH3-like domain 88 174 IPR008991 -
Stsc60536g00009 234 FunFam 60S ribosomal protein L6 88 173 - -
Stsc60536g00009 234 MobiDBLite consensus disorder prediction 170 198 - -
Stsc60536g00009 234 PANTHER 60S RIBOSOMAL PROTEIN L6 8 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Stsc60536g00009 234 MobiDBLite consensus disorder prediction 41 70 - -
Stsc60536g00009 234 Coils Coil 163 183 - -
Stsc60536g00009 234 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Stsc60536g00009 234 CDD KOW_RPL6 82 234 IPR041997 -
Stsc60536g00009 234 Gene3D - 88 174 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60536g00009 Stsc-Chr60536 41567 43588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60536g00009 1 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 82.906 2.07e-125 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60536g00009 K02934 - gmx:100784101 384.415