Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60536g00001 ATGACAGGAGGGAGTAAGAAGAACCAAACAAGCCCAGTAGGAAGCCCAACTTCAGGGAACATCTCAGATAGTTCTTCGTCAAAGGAACAGCAAGACAGGTTCCTTCCGATTGCAAACGTGAGCAGGATCATGAAGAAGGCGCTTCCCCCAAACGCGAAGATCTCGAAGGAGGCGAAGGAAACTGTTCAGGAGTGTGTGTCTGAGTTCATAAGCTTCATAACCGGCGAAGCTTCGGACAAGTGCCAAAGGGAGAAGAGGAAGACCATAAATGGCGATGATCTTCTCTGGGCCATGACTACGCTTGGTTTTGAGAATTATGTTTCACCGTTGAAGGTTTATCTCAACAACTATAGGGAAACTGAAGGGGACAAGAGTTCCTCCATGGCTAGACAAGAAGATCATCATCTTCTTCATCATCATCATCATTCTCCACCAGAATCCAATAACAATAATGAACATGGTGTTGCTGATTTTGCAGGTTTTAATAATAATAGTAATAATAATGGAGGGTTTTACTCTGTTGGGCCTCATCAAGTTATGAATCACAGAGCTATTACTACTCCGTCGCCAAAGAGTTTCAATAATCATGAGATTGGAGGAATCACAAGAGGTTACAAAGAAAGTTCAATCAACCACCGGGGTATTGTTCATCAGAGTGTGGTTGATGTCAATGGTGATGGTGATGTTAATGGTAATAATAATAGCAGGTTGATGATGGCATCAGACCTACGTTATAGGGTTGAATGGTAG 750 0.428 MTGGSKKNQTSPVGSPTSGNISDSSSSKEQQDRFLPIANVSRIMKKALPPNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKVYLNNYRETEGDKSSSMARQEDHHLLHHHHHSPPESNNNNEHGVADFAGFNNNSNNNGGFYSVGPHQVMNHRAITTPSPKSFNNHEIGGITRGYKESSINHRGIVHQSVVDVNGDGDVNGNNNSRLMMASDLRYRVEW 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60536g00001 249 ProSitePatterns NF-YB/HAP3 subunit signature. 65 81 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc60536g00001 249 MobiDBLite consensus disorder prediction 1 33 - -
Stsc60536g00001 249 MobiDBLite consensus disorder prediction 123 147 - -
Stsc60536g00001 249 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Stsc60536g00001 249 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Stsc60536g00001 249 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Stsc60536g00001 249 FunFam Nuclear transcription factor Y subunit B-3 22 148 - -
Stsc60536g00001 249 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
Stsc60536g00001 249 SUPERFAMILY Histone-fold 31 142 IPR009072 GO:0046982
Stsc60536g00001 249 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 19 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc60536g00001 249 MobiDBLite consensus disorder prediction 123 160 - -
Stsc60536g00001 249 Gene3D Histone, subunit A 21 154 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60536g00001 Stsc-Chr60536 4985 5994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60536g00001 26 133 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.333 2.49e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc60536g00001 CBFD_NFYB_HMF 4.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60536g00001 K08065 - gmx:100797721 270.396