Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60535g00006 ATGAACTATATGCTTATTCTCATTGCCACTCTCAAGATTATAAAGACGAAGATAAGCAAGTTACAAGAGGCAATGGGAGTTCCAACTAAAAGGACGATAACACACCCTATTTTCAAGTCAAAAGAAGATACATCAATAACAGATTCTAACGAACGCACTCTAATTCGTAGAAGGGTTCTCATCAATTCCAATAATAATAAGAATGGCACTTGTTCATCATTTTCCTTACCCTATGATTCATGGATGGTGAAGCACCCTTCTGCGTTGCACTCGTTTGAGAGATTGATGAAATCAGCAATGGGGATGAGGATCATCGTTTTCTTAGACTATGATGGCACCTTATCTCCAATTGTCAATGATCCTGATCGAGCTTTCATGTCTGATGAGATGCGTGCCGCTGTTTGTGAAGTTGCTACTTATTTTCCAACGGCAATAATTAGCGGAAGAAGCAGAGAAAAGGTAAAAGATTTTGTGAAGTTAAATAATTTATATTATGCGGGGAGCCATGGAATGGACATTATGGCACCATCAATGGCACTTGAATCTTCTAATGGCAAGCATTGTGACATGGCCCTTAATGCAACAAAAGGCAATGGAGTTCCCTTTCAACCCGCCAAGAAGTTCTTGCCGGCTATTCAGCAGATAGTTAGAAGATTAGAGAATGAAGTAAAGGATATAAAAGGTGCAAGAGTAGAGGACAATGGATTCTGCCTCTCTGTACATTTCAGGCAGGTTCAAGAACAGGATTATGGTGTTTTGGAGAAGAAAGTGAAGCGTGTGGTTGAAGAGAATCCAGAATTTCGGTTAACAGAGGGTAAAAAGGTGTTGGAAATAAGGCCATCCATAGAATGGAACAAAGGCAATGCTGTTGAGTATTTTCTTGACATTTTAGGATTAAATGCTTCTTCCAACATCCTTCCTCTCTATATTGGAGATGATCGAACTGATGAAGATGCTTTTAAGGTGATAAAGAGAAGAGGGCAAGGATATCCAATTGTAGTGTCTTCAATTCCAAGAGACACAAATGCTTTCTACTCTCTGCGTGACCCAGCAGAGGTCCTAATCTTCTTGACAAAGCTTGCAAAATGGATGAAACCCTCTTCATCATCTTCTATCCCAAAACCACCATGCCCTTAA 1137 0.3984 MNYMLILIATLKIIKTKISKLQEAMGVPTKRTITHPIFKSKEDTSITDSNERTLIRRRVLINSNNNKNGTCSSFSLPYDSWMVKHPSALHSFERLMKSAMGMRIIVFLDYDGTLSPIVNDPDRAFMSDEMRAAVCEVATYFPTAIISGRSREKVKDFVKLNNLYYAGSHGMDIMAPSMALESSNGKHCDMALNATKGNGVPFQPAKKFLPAIQQIVRRLENEVKDIKGARVEDNGFCLSVHFRQVQEQDYGVLEKKVKRVVEENPEFRLTEGKKVLEIRPSIEWNKGNAVEYFLDILGLNASSNILPLYIGDDRTDEDAFKVIKRRGQGYPIVVSSIPRDTNAFYSLRDPAEVLIFLTKLAKWMKPSSSSSIPKPPCP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60535g00006 378 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 60 370 IPR044651 GO:0004805|GO:0005992
Stsc60535g00006 378 FunFam Trehalose 6-phosphate phosphatase 210 368 - -
Stsc60535g00006 378 Gene3D - 201 371 IPR023214 -
Stsc60535g00006 378 Gene3D - 104 200 IPR023214 -
Stsc60535g00006 378 FunFam Trehalose 6-phosphate phosphatase 104 190 - -
Stsc60535g00006 378 Pfam Trehalose-phosphatase 107 350 IPR003337 GO:0003824|GO:0005992
Stsc60535g00006 378 NCBIfam trehalose-phosphatase 103 361 IPR003337 GO:0003824|GO:0005992
Stsc60535g00006 378 NCBIfam HAD-IIB family hydrolase 105 326 IPR006379 -
Stsc60535g00006 378 CDD HAD_TPP 106 353 - -
Stsc60535g00006 378 SUPERFAMILY HAD-like 105 364 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60535g00006 Stsc-Chr60535 51737 62377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60535g00006 103 361 Trehalose Biosynthesis Gene Families AT1G70290 27.798 1.14e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60535g00006 K01087 - gmx:100819120 504.212