LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60535g00005	ATGATGGAGTGCAACAGGGATGAGGCAGTTAGGGCCAAAGAAATAGCGGAGAGGAAATTTTCTGAAAGGGAATATGTTGGCGCAAAGAAGTTTGCTCTCAAGGCTCTAAATCTGTATCCGGCATTGGAGGATCTTCCCCAGTTTTTGCAAACAATTGAAATTTATATCTCTGCTGAGAATAAAATTAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGCCCCTTTGCTGATGAAGAGACTGTTAGAAAGCAATACAGGAAGCTGGCCCTCTCTCTCCACCCCGATAAAAACAAGTGTTTAGGTGCAGAGGGTGCATTCAAGCTGGTTTCAGAGGCATGGAGTTTGCTATCAGACAAGACCAAGAGACTAGAATATAACCAAAAGAGGAGTTCAAAAGGTTTTCAACATAACACTTCAAATCATGCTGCATCTCAATCAGATACACCTAGTTCAAATGGTTATTATAATTTCAAGAAGGATAATGTGAGAAGTGGAAATAGTAACTCTCGGAAATCTTCATCTTCAGTGCCACCTACACACAGAAGAGCTGAAACCTTTTGGACTATCTGCAATCGATGCAGAACACATTATGAATATCTGAGGGTTTATTTGAATCATACCCTTTTGTGTCCCAACTGCAATGAAGCTTTTGTAGCTGTGGAGAGGGGTCCGCCTCCCAATGTTTTTAAGTCACCGAATTGGTCTTCTCGACATCAGCATCAGGGTTCTCGACATCAATCTGGAAGTAATAACTCAAACTATCAGTGGGGTTCTCAATCTTCTGTTGCAGCTCAAGCTGCAAGTGTTGTGCAACAGGCGAGTGAGAAGGTGAGGAGAGACGGAGCACCATCAATTGCTGAATGGGAAAGGAGTCAAATGTCTAAGAGGAATGATGGTTCTTATTATAATACGAAGAAGAGGAAGACTGATGATTTTCATGTTAATGGTTATCAAGGATATCCAGCAAATCAAGGTCATGGTTTTGGTTCTGAACCAGGAAGGGTAAACTTGGAATCTGAAAGGCATTATGGTTCTTCGGGTATGACTGGCAAGCCTTACAGCACAAGAGAATTGTCGATGTATGAATTAAGAAACATGTTGATGGATAAGTCACGGATTGAAATCCGTAAAAAACTACAAGAATGGAAATCACAAGCGGAAGCCAAGGTCGCCAATAAGAGACAGAAAAGCACAGTTACTAGCAAAACCAATGGTAATGGTAATAGGCATGTTGAGGTTGGTGACCCATCTGATGATACAGTTAAGAACCCATCCTATGTTACAATCAATGTTCCAGACCCTGATTTTCACAACTTTGACTTGGATAGAGCTGAAAATTCTTTTGATGAGGACCAGGTTTGGGCTGCGTATGACGATGATGATGGAATGCCTCGATATTATGCTAAGATTCACAAGGTGATCTCCACAAAGCCATTCAGAATGCGGATCAGTTGGCTCAACTCACGTAGCAACAGTGAATTGGGCCCCATGGACTGGGTAGGGTCTGGTTTCTATAAAACTCTCGGGGATTTCAGAACCGGCAAGCATGAAATAACCGAATCGCTGAACTCATTCTCACACCAGGTTAAGTGGAGCAAAGGGAACAGAGGAGTTGTCCGCATCTTTCCTGGAAAAGGTGAAGTCTGGGCTGTTTATAGAAACTGGTCTCATGATTGGAATGAACACACCCCAGATGATGTGATACACAAGTATGATATGGTGGAGGTGCTCGAAGATTTCACTGAGGAGCAAGGCGTGATAGTTACCCCCCTTGTCAAGGTTGCTGGTTATAGGACCGTGTTTAAGAGGCACCCGGACGCCAATCAGCAGAAGAGGATTCCCAAAGAGGAGTTGTTTCGATTCTCACATCAGGTTCCTAACTACTTGCTTACCGGCCAAGAAGCCAACAACGCTCCAAAGGATTGTCGAGAGTTGGATCCGGCTGCCACTCCATTAGACCTCCTTCAGATAATATCCGGTGATGCTAACAGAGAATCACCGGATAACAATGCTTAG	2022	0.4332	MMECNRDEAVRAKEIAERKFSEREYVGAKKFALKALNLYPALEDLPQFLQTIEIYISAENKISGEMDWYGILGVSPFADEETVRKQYRKLALSLHPDKNKCLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSSKGFQHNTSNHAASQSDTPSSNGYYNFKKDNVRSGNSNSRKSSSSVPPTHRRAETFWTICNRCRTHYEYLRVYLNHTLLCPNCNEAFVAVERGPPPNVFKSPNWSSRHQHQGSRHQSGSNNSNYQWGSQSSVAAQAASVVQQASEKVRRDGAPSIAEWERSQMSKRNDGSYYNTKKRKTDDFHVNGYQGYPANQGHGFGSEPGRVNLESERHYGSSGMTGKPYSTRELSMYELRNMLMDKSRIEIRKKLQEWKSQAEAKVANKRQKSTVTSKTNGNGNRHVEVGDPSDDTVKNPSYVTINVPDPDFHNFDLDRAENSFDEDQVWAAYDDDDGMPRYYAKIHKVISTKPFRMRISWLNSRSNSELGPMDWVGSGFYKTLGDFRTGKHEITESLNSFSHQVKWSKGNRGVVRIFPGKGEVWAVYRNWSHDWNEHTPDDVIHKYDMVEVLEDFTEEQGVIVTPLVKVAGYRTVFKRHPDANQQKRIPKEELFRFSHQVPNYLLTGQEANNAPKDCRELDPAATPLDLLQIISGDANRESPDNNA	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60535g00005	673	MobiDBLite	consensus disorder prediction	230	261	-	-
	Stsc60535g00005	673	MobiDBLite	consensus disorder prediction	275	309	-	-
	Stsc60535g00005	673	SUPERFAMILY	Chaperone J-domain	63	150	IPR036869	-
	Stsc60535g00005	673	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Stsc60535g00005	673	MobiDBLite	consensus disorder prediction	129	180	-	-
	Stsc60535g00005	673	Pfam	Domain of unknown function (DUF3444)	430	636	IPR024593	-
	Stsc60535g00005	673	MobiDBLite	consensus disorder prediction	231	261	-	-
	Stsc60535g00005	673	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Stsc60535g00005	673	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Stsc60535g00005	673	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Stsc60535g00005	673	MobiDBLite	consensus disorder prediction	388	424	-	-
	Stsc60535g00005	673	CDD	DnaJ	67	120	IPR001623	-
	Stsc60535g00005	673	SMART	dnaj_3	66	123	IPR001623	-
	Stsc60535g00005	673	MobiDBLite	consensus disorder prediction	393	412	-	-
	Stsc60535g00005	673	ProSitePatterns	Nt-dnaJ domain signature.	108	127	IPR018253	-
	Stsc60535g00005	673	Gene3D	DnaJ domain	64	176	IPR036869	-
	Stsc60535g00005	673	PANTHER	BNAC03G44070D PROTEIN	2	653	-	-
	Stsc60535g00005	673	MobiDBLite	consensus disorder prediction	132	180	-	-
	Stsc60535g00005	673	Pfam	DnaJ domain	67	128	IPR001623	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60535g00005	Stsc-Chr60535	42667	47121	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60535g00005	5	227	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	32.035	7.59e-28	113

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60535g00005	-		-	adu:107460588	1253.04