Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60535g00002 ATGAGAGTGAAAAGGAGAGATGCAGAACAGTGGATGTCTCATCGTTTACTTCCCGACAGCCTGAGAGAGAGAATCAGACGACACGAACAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACCATTTGATCCGCGATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGAGCAACTTTTGGATGCAATGTGCGACCGTCTCAAGCCGGTGCTTTACACAGAAGAAAGCTGCATTGTCCGCGAAGGAGATCCTGTGGACGAGATGCTCTTCATAATGCGAGGAAAGCTATTGACTGTGACAACAAATGGCGGGAGAACAGGCTTCTTTAACTCGGAATACCTAAAGGCCGGAGACTTCTGTGGAGAGGAGCTCCTCACATGGGCACTAGACCCTAATCCCTCATCCAATCTTCCAACCTCAACGAGGACCGTCCAAACTCTTTCGGAGGTGGAAGCATTTGCTCTAAAGGCTGACGACTTGAAGTTCGTTGCATCTCAATTCCGGCGCCTTCACAGCAAGCAGCTTCGACACACTTTCAGGTTCTACTCACAGCAGTGGCGCACTTGGGCCGCTTGCTTCATACAAGCTGCATGGAGGCGGTATAGCAAACGGAAGCTGGAAGAGAGTCTCCGGGAAGAGGAGAATAGGCTGCAAGATGCATTGGCCAAGGCCGGTGGCAGCTCGCCTAGTCTTGGCGCCACAATATATGCTTCTAGATTTGCAGCTAATGCGCTCAGAGCTCTTAGCAGAAATGGCACCAGGAAGAGTAGGGTGCCAGAGAGATTACCACCCATGCTGCTTCAGAAGCCTGCTGAACCAGATTTTACTGCTGAAGAGAGAAATTGA 903 0.495 MRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDHLIRDLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPNPSSNLPTSTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRALSRNGTRKSRVPERLPPMLLQKPAEPDFTAEERN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60535g00002 300 ProSiteProfiles cAMP/cGMP binding motif profile. 70 154 IPR000595 -
Stsc60535g00002 300 Coils Coil 222 242 - -
Stsc60535g00002 300 SMART cnmp_10 70 201 IPR000595 -
Stsc60535g00002 300 CDD CAP_ED 70 201 IPR000595 -
Stsc60535g00002 300 FunFam Cyclic nucleotide-gated ion channel 1 68 186 - -
Stsc60535g00002 300 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 294 - -
Stsc60535g00002 300 ProSiteProfiles IQ motif profile. 206 235 IPR000048 GO:0005515
Stsc60535g00002 300 FunFam Cyclic nucleotide-gated ion channel 1 1 61 - -
Stsc60535g00002 300 Gene3D Helix hairpin bin 1 61 - -
Stsc60535g00002 300 MobiDBLite consensus disorder prediction 270 300 - -
Stsc60535g00002 300 SUPERFAMILY cAMP-binding domain-like 2 193 IPR018490 -
Stsc60535g00002 300 Pfam Cyclic nucleotide-binding domain 90 181 IPR000595 -
Stsc60535g00002 300 Gene3D Jelly Rolls 68 188 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60535g00002 Stsc-Chr60535 12006 13414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60535g00002 1 298 Ion Channels AT5G53130 86.000 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60535g00002 K05391 - gmx:100815774 568.54