Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60533g00018 ATGCATTTGCTCAGAGAAGGAAGAGAGAGTTTACTAAAAATGGCTAGACTAAGTTCAACTTACTATAGTGATAAACATGGGGTCCTGCTTCTCCTTCTTTCGTTACTACTTCAGATTTCATCTCAAGTTGCAAACTGTGGCAGCATAGTCAAGTACCTTCCAGGGTTCCAGGGACCCCTTCCTTTTCTGCTTGAAACTGGGTATATAGGAGTGGGTGAAAATGATGATGTGCAGGCTTTCTACTATTTCATTGAGTCAGAGAACAATCCTAAGGTGGATCCTCTCATGCTGTGGCTCACCGGTGGACCTGGCTGCTCTGCTTTCTCTGGCCTTGTCTTTGAAATTGGACCACTTGCATTTCAAACTGAGGAATATAATGGAAGCTTGCCTAATTTGGTCTATAGGCCCTACTCATGGACAAAGATAAGTAGCATTATATTTGTAGATTTGCCGGTTGATACAGGCTTCACATATGCAAGATCAGAATCTGTTACAGCGAGAAGCGACTCATTGCTAGTTAGTCAAACTCATCAATTTTTTAGGAAGTGGCTGAATGAGCATCCACAATTTCTCTCAAATGAAGTTATCATTGGAGGCGATTCATACTCCGGTATTCCTATTCCAGCAATTGTTGATGAAATTTCACGAGATAATGAAGAAGGAGGCCAACCTTGGATAAATCTTCAGGGGTACCTGCTGGGAAATGCTGCAACAACTAGAACCGAGAAGAACTATCAAATCCCATTTGCTCATGGAATGGGACTAATTTCTGATGAACTATACCAGTCACTTCAAAAAAATTGTGAAGGAGAATATATAAAAGATGACACTAGAAGTGCATTATGTTCAAGAGATCTCAAGTCCTTTGATGAGATGACATCAGGACTCAATAAAGCCCATATCTTGGAACCTTCATGCGAATTTGGTTCACCTAAGCCGTCGAAGGCTTCTTGGAGGCGATCTATAGCCGAAAACTATCCTTTGAAGTTTGTCAGCGACACTCGTCTCGGATTACCATCCTTGAACTGCCGGACTTATGCATACTTCCTTAGTAGATATTGGGCCAATGATGAGAGTGTAAGGAAAGCGCTAAACGTTCGAAAGGGAACAAAAAAGGAATGGCAACGCTGCACCTTCAATATACCTAACAAGAAGGATATCCCTAGCAGCTTTCCATATCATGTAAAGCTCAGCAGAAAAGGATATCGTTCGCTGATATACAGTGGCGATCATGACATGAATATTCCTTTTATGGCGACTCAAGCGTGGATAAGATCACTAAACTACTCAATCATTGATGACTGGAGGCCATGGTATACAAATGGCCAAGTTGCAGGGTACACAAGAACTTACTCCAATATGATGACATTTGCAACTGTCAAGGGTGGAGGGCACACAGCTCCCGAATACAAGCCTGAAGAATGCTTGGACATGTACAGTAGGTGGATCTCTAACAGGCCATTGTAG 1467 0.4219 MHLLREGRESLLKMARLSSTYYSDKHGVLLLLLSLLLQISSQVANCGSIVKYLPGFQGPLPFLLETGYIGVGENDDVQAFYYFIESENNPKVDPLMLWLTGGPGCSAFSGLVFEIGPLAFQTEEYNGSLPNLVYRPYSWTKISSIIFVDLPVDTGFTYARSESVTARSDSLLVSQTHQFFRKWLNEHPQFLSNEVIIGGDSYSGIPIPAIVDEISRDNEEGGQPWINLQGYLLGNAATTRTEKNYQIPFAHGMGLISDELYQSLQKNCEGEYIKDDTRSALCSRDLKSFDEMTSGLNKAHILEPSCEFGSPKPSKASWRRSIAENYPLKFVSDTRLGLPSLNCRTYAYFLSRYWANDESVRKALNVRKGTKKEWQRCTFNIPNKKDIPSSFPYHVKLSRKGYRSLIYSGDHDMNIPFMATQAWIRSLNYSIIDDWRPWYTNGQVAGYTRTYSNMMTFATVKGGGHTAPEYKPEECLDMYSRWISNRPL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60533g00018 488 Gene3D - 343 488 - -
Stsc60533g00018 488 FunFam Carboxypeptidase 342 487 - -
Stsc60533g00018 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 135 147 IPR001563 GO:0004185|GO:0006508
Stsc60533g00018 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 455 468 IPR001563 GO:0004185|GO:0006508
Stsc60533g00018 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 183 208 IPR001563 GO:0004185|GO:0006508
Stsc60533g00018 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 148 158 IPR001563 GO:0004185|GO:0006508
Stsc60533g00018 488 FunFam Serine carboxypeptidase-like 11 44 488 - -
Stsc60533g00018 488 SUPERFAMILY alpha/beta-Hydrolases 50 487 IPR029058 -
Stsc60533g00018 488 Pfam Serine carboxypeptidase 54 485 IPR001563 GO:0004185|GO:0006508
Stsc60533g00018 488 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 48 472 IPR001563 GO:0004185|GO:0006508
Stsc60533g00018 488 Gene3D alpha/beta hydrolase 45 313 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60533g00018 Stsc-Chr60533 80655 83823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60533g00018 44 73 Calmodulin-binding Proteins AT2G22960 73.333 2.32e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60533g00018 K16296 - gmx:100792006 717.998