Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60533g00017 ATGAAAATGGCAAGGTCATCTACAAGTTATAGGATATCTGATTTCACATTTCATGGCGTCTTCCTACTTCCCCTTCTTTTCTTAATACTACACTTTTCATCTCACCTTGCAAACTGTGCCACCATAGTCAAGTATCTTCCAGGATTCCAGGGACCCCTTCCTTTTCGCCTTGAAACTGGATATATTGGGGTGGGTGAAAATGATGATGTGCAGACTTTCTACTATTTCATTGAGTCAGAGAGCAATCCTAAGCTGGACCCTCTCATTCTATGGCTCACCGGTGGTCCTGGTTGCTCTGCTTTCTCTGGCCTTGTCTTTGAAATTGGTCCTCTTATGTTTAGAAATGAAGAATATAATGGAAGTCTGCCTAATTTGTATTTGAAGCCACACTCTTGGACAAAGGTAAGCAACATTATATTTGTAGATTTGCCTGTTTTAACAGGCTTCTCTTATGCTAGAACTGATTCTGCTGCTCAACGAAGTGATTGGTTACTAGTCAATCAAACTCATCAATTTCTTAGGAAGTGGCTGATTGAACATCCAAAATTTCTTTCACATGAAGTTTACATTGGTGGTGATTCATATTCTGGTATTCCTATCCCAGCAGTTGTTCAAGAAATTTCACAAGGAAATGAAGAAGGGGTCCAACCATGGATTAATCTCCAGGGATACCTGCTGGGAAATCCTGTAACAACTGGAAAAGAAAAGAACTATGCAATCCCATTTGCTCATGGAATGGCACTTATTTCTGATGAACTATACCATTCACTGCAAGAAAATTGTAAAGGAGACTATATAAATATAGACGCAGAAAATGTGTTATGTTCAAGAGACATTGCTTCCTACAATGAGGCTACAAAAGGACTCAATCCAGCACACATTTTGGATCCTTTATGCGAGTTCATCACTTTGTATAAGCCGCGAAAAGTTTCTTGGAGGAGAGATCTTACTGAGAAAAAGTATCCCAGGAATTCCCTTGCTTCTCCCCTGACATTGCCGCCGTTAAGCTGCCGTAGTTATCCATACTTCCTTTGCACTTATTGGGCCAATGATGATAGTGTTCGCAATGCGCTTAACATAAGAAAGGGAAGCATCGGCGAATGGCATCGCTGTACATGGAACATACCTCACAAGATGGAAATCTATAACAGCTTTGAGTATCATGTAAATCTCAGTCAAAAAGGCTATCGTTCACTGATATACAGCGGCGATCATGACATGTCTGTTCCTTTCTTGTCGACTGAAGCATGGATAAGATCCTTAAACTACTCCATTGTGGAAGATTGGAGACAATGGCATACTAATGAACAAGTTGCAGGATACACAAGGACTTACTCTAATAGGATGACATTTGCAACTGTGAAGGGTGGTGGACACACAGCACCAGAGTTCAAGCCTGAAGAATGCTTTGCTATGTACAGCAGGTGGATCTCTAAGAGGCCTTTGTAG 1449 0.4092 MKMARSSTSYRISDFTFHGVFLLPLLFLILHFSSHLANCATIVKYLPGFQGPLPFRLETGYIGVGENDDVQTFYYFIESESNPKLDPLILWLTGGPGCSAFSGLVFEIGPLMFRNEEYNGSLPNLYLKPHSWTKVSNIIFVDLPVLTGFSYARTDSAAQRSDWLLVNQTHQFLRKWLIEHPKFLSHEVYIGGDSYSGIPIPAVVQEISQGNEEGVQPWINLQGYLLGNPVTTGKEKNYAIPFAHGMALISDELYHSLQENCKGDYINIDAENVLCSRDIASYNEATKGLNPAHILDPLCEFITLYKPRKVSWRRDLTEKKYPRNSLASPLTLPPLSCRSYPYFLCTYWANDDSVRNALNIRKGSIGEWHRCTWNIPHKMEIYNSFEYHVNLSQKGYRSLIYSGDHDMSVPFLSTEAWIRSLNYSIVEDWRQWHTNEQVAGYTRTYSNRMTFATVKGGGHTAPEFKPEECFAMYSRWISKRPL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60533g00017 482 FunFam Carboxypeptidase 336 481 - -
Stsc60533g00017 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 176 201 IPR001563 GO:0004185|GO:0006508
Stsc60533g00017 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 449 462 IPR001563 GO:0004185|GO:0006508
Stsc60533g00017 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 141 151 IPR001563 GO:0004185|GO:0006508
Stsc60533g00017 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 140 IPR001563 GO:0004185|GO:0006508
Stsc60533g00017 482 FunFam Serine carboxypeptidase-like 11 37 482 - -
Stsc60533g00017 482 Gene3D - 338 482 - -
Stsc60533g00017 482 Pfam Serine carboxypeptidase 47 478 IPR001563 GO:0004185|GO:0006508
Stsc60533g00017 482 SUPERFAMILY alpha/beta-Hydrolases 43 481 IPR029058 -
Stsc60533g00017 482 Gene3D alpha/beta hydrolase 37 306 IPR029058 -
Stsc60533g00017 482 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 42 466 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60533g00017 Stsc-Chr60533 76990 79970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60533g00017 35 66 Calmodulin-binding Proteins AT2G22960 65.625 3.06e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60533g00017 K16296 - gmx:100792006 734.176