Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60533g00016 ATGAACACTGAAGAAGCTTCTTCTTCTTCTTCTTCTTCTGCAACTCGAAACAATGACGATGGAGGAGGAAAAGGGAAGAACAAAGCAAGCCAGAAGGTTCCATTCTACAAGCTGTTCTCTTTCGCGGATCGCCTTGACGTGATTTTGATGATCGTTGGAACACTCGCTGCAATCGGTAATGGCTTGTCTCAGCCTCTAATGACTGTCATCTTCGGCAAGCTTATCAACACTTTCGGTTCCGGTGATCCTTCTCGTATCGTCAAGGAAGTTTCAAAGGTTGCATTGCTATTTGTTTACCTGGCTATTTGGTCTGGAATTACATCATTTCTGCGAGAAAGACAAGCAGCTAGGATCCGTGGTTTGTACTTGAAAACCATATTGAAACAAGACATTGCCTTCTTTGACACTGAAACTACAACCGGAGAGGTCATTGGTAGAATGTCTGGTGACACTATTCTCATTCAAGATGCCATGGGAGAGAAGGTTGGGAAGTTTATTCAGCTTGGTTCAACATTTGTTGGTGGCTTTGTGATTGCCTTCATAAAAGGATGGAAACTCTCTCTAGTTTTGCTTGCATTCATACCCTGTGTGGTGATTGCTGGTGGAATTATGTCCATAACGATGGCTAAAATGGCAAGCCGTGGACAGATTGCGTATGCAGAAGCAGGGACTGTTGTTGAACAAACAGTTGGAGCCATTAGAACTGTAGCATCTTTTACTGGGGAGAAGAAAGCAATAGAAAATTACAATATCAAGTTAAAAGTTGCATATAATACAGTGGTTCAACAAGGAATGGCCTCAGGTATAGGACTTGGAGCACTTCTGTTCATTATCTTTAGCACCTATGGGCTTGCCACGTGGTATGGTTCCAGGCTGATCATTGAGAAAGGATACAATGGTGGAACAGTAATCAATGTAATCATTGCTCTTATGACCGGTGGAATGTCACTTGGTCAGACATCTCCTTGCGTAAATGCATTTGCAGCAGGCAGAGCAGCAGCATATAAGATGTTTGAGACAATAGAAAGGAAACCAAAAATTGATGTATATGACACAAACGGTGTTGTCTTGGAAGACATTAAGGGAGATGTTGAACTCAGAGATGTTCACTTCAGATATCCTGCTAGGCCAGATGTGCAGATCTTTGCTGGAATCTCATTGCGTGTTCCAAATGGCACAACTGCTGCTTTGGTTGGTCAAAGTGGCAGTGGAAAGTCAACGGTGATAAGCTTATTGGAAAGATTCTACGATCCTGATGCTGGAGAAGTACTAATAGATGGGGTCAACTTAAAGAATTTCCAACTTAGATGGATAAGAGAACAAATTGGTTTGGTTAGTCAAGAACCTACTCTGTTTACAGCTAGTATCAAAGACAACATTGCTTATGGAAAAGAAGGTGCAACTGATGAGGAGATAATGACAGCAATAACACTTGCCAATGCCAAAAATTTCATTGACAAGTTGCCTCAGGGAATTAACACAATGGCTGGGGAGCATGGCACACAACTTTCTGGTGGCCAAAAGCAAAGAATTGCCATAGCAAGGGCAATTTTGAAGAATCCAAAAATTCTGCTTCTGGATGAAGCCACAAGTGCATTGGATGCTGAATCTGAACGTATTGTTCAAGAAGCCTTAGAGAAAGCCATGTCAAATAGAACTACTGTAGTTGTTGCACATCGTTTAACAACTATTAGGAATGCTGACACTATTGCAGTGGTTCAGCAGGGGAAAATAGTAGAACAAGGGTCTCATGATGAGTTAATCAAGGACCCTGAGGGTCCTTATTCTCAGCTTATTCGCTTACAAGAAGGACAAAATGAGGATGAAGGTAGCAAAATTTCTGAAGCAGATTTAGATAGAGATCCCTTCCATAAACCATCTATCTCGAGATCATTAAGCCGAGTTTCATCAGGGAGAAGATCTTCTCATTCAAATAACACTTTTTCCCCTATGACTTTAGAGAGTTCAGTACAAGAAAAAGGTGATCGCGATGTTGAAACTGATGAACGCAGTCATAAAAAGCGCAAAAACGTTTCCATGATACGTTTGGCCTATTTGAACAAACCTGAACTTCCTGTGTTACTGCTTGGAGTCATTGCTGCAGCAGTGCATGGAGTTGTGTTCCCCATATTTGGCCTATTGCTTTCATCAGCCATTAAGATGTTCTTTGAGCCTCCACATCAGCTAAGGAAGGATTCTAGGTTCTGGTCACTTTTGTATGTTGGTTTGGGTGTGCTCACTCTCATTGCTATACCAGTGCAGAATTACTTCTTTGGGATTGCTGGAGGAAAACTCATTGAAAGGATTCGCTCGTTGACATTCCAGAAGGTTGTGCACCAAGAAATCAGTTGGTTTGATCATCCTGAAAATTCAAGTGGTTCAGTTGGTGCAAGGTTATCTACTGATGCTTCAACGGTGAGGAGTCTTGTTGGTGACACATTGGCCCTCCTTGTGCAAAACATATCCACAGTCATAGCAGGTCTAGTTATAGCTTTCACTGCTAATTGGATTCTAGCTTTTATAATCCTGGCTGTGTCACCATTTGTCCTCATCCAAGGATTCCTTCAGATGAAATTTCTAAAAGGGTTCAGTGCTGATGCCAAGTTGATGTATGAAGAAGCAAGTCAAGTGGCAAATGATGCTGTTGGTAGCATCAGAACCGTTGCATCGTTTTGTGCAGAATCAAAGGTGATGGATTTGTACAGGAAGAAATGTACAGGACCAGAAAAACAAGGTGTAAGGTTGGGGCTTGTTAGCGGAGCAGGACTTGGTTTCTCATTTTTTGCTCTATACTGCACAAATGCCTTTTGTTTCTACATAGGATCTGTTCTTGTGCAGCATGGGAGAGCAACTTTTTCAGAGGTTTTCAGGGTTTTCTTTTGCCTAACAATGACAGCACTCGGCGTTTCCCAGACTAGTGCCTTGGCACCAGACACAAACAAGGCCAAGGATTCCACAGCTTCAATATTTGAAATCCTTGATAGCAAACCAGCGATTGACTCCAGCAGCAATGAGGGAATTACATTAGACCATGTTGTTGGTGCCATTGAACTTCAAAATGTCAGCTTTAGTTACTCAACGAGGCCTCATATCCAAATTTTCAAAGATTTGTGTCTAAGCATCCCTGCTGGGAAGACTGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTCTACAACCCAGATTCCGGACAGATACTCATTGATGAAGTGGACATCACTAAGTTCAGAATAAGCTGGTTGAGGCAACAAATGGGTTTGGTGGGTCAAGAGCCAATTCTATTCAATGAAAGCATCCGCGACAACATAGCATATGGCAAAGAAGGAGGTGCCACTGAGGAAGAGATCATTGCAGCAGCACAAGCAGGGAATGCACACAAGTTTATAAGCTCTCTTCCAAAAGGATATGACACTAATGTTGGGGAAAGAGGGACACAACTCTCTGGTGGACAAAAGCAGCGTATTGCCATTGCAAGAGCCATGCTTAAAGAGCCTAAGATACTATTGCTGGATGAAGCAACAAGTGCACTTGATGCTGAATCAGAGCGTGTGGTTCAAGAGGCTCTAGATAAAGTGAGTGTGGACAGAACTACTGTGGTGGTAGCTCATAGGCTTTCAACAATCAAAGGTGCTGATACCATTGCTGTGGTGAAGAATGGAGTGATTGCTGAGAAGGGAAGACATGATTCTTTGATGAAGATCGAGGGTGGCACTTACGCTTCCTTGATGGCCACGATATACGTGGTTCCAGTGTTTAATGTTGGAGGATATTTAGTAAGGAATGAGGCTGGTGATCTTGTGTATGCTGAGGGAAGGGTTGAGAAGTTCGAGGAGATGGACATTGATCATGTGAATTTTGGGGATTTGGTCAAGTTATACAAGAGTTTAGGGTTTGTGTCACACCAGAGGATGCACTGGTTGGATAAAAATGCTATTGATTTTGAGGCTGGACTCTATGAATTGGATGGTGATAATGGTATACGTGATATGTGTCACAATCTGATGGTGAACATTGGGGCCAGCAACGAGTTCCACATTTATGTTGAGCATTCAATAGACGTTCCAATACCAGCTCCAGCTCTAGATCCTGCTCCAGCTCCACCTCCTGCTCAAGCTCATGCTTCGGCTCCAGCTTCAATCATTGATTTGCAGGACACCTCTGGAGACGATGGTTATGAGAGTGCCGAAGACGAAGTATACAAAGGGTTTGGTGGGGTGTTCACGCATAGAAAAGGTCTATGCGTGGATTGCCCTTATATGCAGAGGAATGGTGTGCTAGTGGGAGGGTTTGGTTCCCACGCATATGCGTAG 4338 0.4295 MNTEEASSSSSSSATRNNDDGGGKGKNKASQKVPFYKLFSFADRLDVILMIVGTLAAIGNGLSQPLMTVIFGKLINTFGSGDPSRIVKEVSKVALLFVYLAIWSGITSFLRERQAARIRGLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLGSTFVGGFVIAFIKGWKLSLVLLAFIPCVVIAGGIMSITMAKMASRGQIAYAEAGTVVEQTVGAIRTVASFTGEKKAIENYNIKLKVAYNTVVQQGMASGIGLGALLFIIFSTYGLATWYGSRLIIEKGYNGGTVINVIIALMTGGMSLGQTSPCVNAFAAGRAAAYKMFETIERKPKIDVYDTNGVVLEDIKGDVELRDVHFRYPARPDVQIFAGISLRVPNGTTAALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNFQLRWIREQIGLVSQEPTLFTASIKDNIAYGKEGATDEEIMTAITLANAKNFIDKLPQGINTMAGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQEALEKAMSNRTTVVVAHRLTTIRNADTIAVVQQGKIVEQGSHDELIKDPEGPYSQLIRLQEGQNEDEGSKISEADLDRDPFHKPSISRSLSRVSSGRRSSHSNNTFSPMTLESSVQEKGDRDVETDERSHKKRKNVSMIRLAYLNKPELPVLLLGVIAAAVHGVVFPIFGLLLSSAIKMFFEPPHQLRKDSRFWSLLYVGLGVLTLIAIPVQNYFFGIAGGKLIERIRSLTFQKVVHQEISWFDHPENSSGSVGARLSTDASTVRSLVGDTLALLVQNISTVIAGLVIAFTANWILAFIILAVSPFVLIQGFLQMKFLKGFSADAKLMYEEASQVANDAVGSIRTVASFCAESKVMDLYRKKCTGPEKQGVRLGLVSGAGLGFSFFALYCTNAFCFYIGSVLVQHGRATFSEVFRVFFCLTMTALGVSQTSALAPDTNKAKDSTASIFEILDSKPAIDSSSNEGITLDHVVGAIELQNVSFSYSTRPHIQIFKDLCLSIPAGKTVALVGESGSGKSTVISLLERFYNPDSGQILIDEVDITKFRISWLRQQMGLVGQEPILFNESIRDNIAYGKEGGATEEEIIAAAQAGNAHKFISSLPKGYDTNVGERGTQLSGGQKQRIAIARAMLKEPKILLLDEATSALDAESERVVQEALDKVSVDRTTVVVAHRLSTIKGADTIAVVKNGVIAEKGRHDSLMKIEGGTYASLMATIYVVPVFNVGGYLVRNEAGDLVYAEGRVEKFEEMDIDHVNFGDLVKLYKSLGFVSHQRMHWLDKNAIDFEAGLYELDGDNGIRDMCHNLMVNIGASNEFHIYVEHSIDVPIPAPALDPAPAPPPAQAHASAPASIIDLQDTSGDDGYESAEDEVYKGFGGVFTHRKGLCVDCPYMQRNGVLVGGFGSHAYA 1445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60533g00016 1445 MobiDBLite consensus disorder prediction 1 20 - -
Stsc60533g00016 1445 Gene3D ABC transporter type 1, transmembrane domain 112 990 IPR036640 GO:0005524|GO:0016020
Stsc60533g00016 1445 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Stsc60533g00016 1445 MobiDBLite consensus disorder prediction 1 29 - -
Stsc60533g00016 1445 FunFam ABC transporter B family member 9 37 359 - -
Stsc60533g00016 1445 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1016 1253 IPR003439 GO:0005524
Stsc60533g00016 1445 PANTHER ABC TRANSPORTER B FAMILY 13 603 IPR039421 -
Stsc60533g00016 1445 Pfam ABC transporter 384 531 IPR003439 GO:0005524
Stsc60533g00016 1445 Gene3D - 1007 1256 IPR027417 -
Stsc60533g00016 1445 Pfam ABC transporter transmembrane region 50 314 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60533g00016 1445 Pfam ABC transporter transmembrane region 694 966 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60533g00016 1445 CDD ABC_6TM_Pgp_ABCB1_D1_like 50 325 - -
Stsc60533g00016 1445 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Stsc60533g00016 1445 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Stsc60533g00016 1445 Gene3D - 362 617 IPR027417 -
Stsc60533g00016 1445 SMART AAA_5 1043 1236 IPR003593 GO:0016887
Stsc60533g00016 1445 SMART AAA_5 391 577 IPR003593 GO:0016887
Stsc60533g00016 1445 ProSitePatterns ABC transporters family signature. 1156 1170 IPR017871 GO:0005524|GO:0016887
Stsc60533g00016 1445 MobiDBLite consensus disorder prediction 605 627 - -
Stsc60533g00016 1445 SUPERFAMILY ABC transporter transmembrane region 682 997 IPR036640 GO:0005524|GO:0016020
Stsc60533g00016 1445 MobiDBLite consensus disorder prediction 604 672 - -
Stsc60533g00016 1445 MobiDBLite consensus disorder prediction 629 656 - -
Stsc60533g00016 1445 MobiDBLite consensus disorder prediction 657 672 - -
Stsc60533g00016 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 602 IPR027417 -
Stsc60533g00016 1445 CDD ABC_MTABC3_MDL1_MDL2 1016 1252 - -
Stsc60533g00016 1445 FunFam ABC transporter B family member 1 674 982 - -
Stsc60533g00016 1445 FunFam ABC transporter B family member 1 354 603 - -
Stsc60533g00016 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1006 1253 IPR027417 -
Stsc60533g00016 1445 CDD ABC_6TM_Pgp_ABCB1_D2_like 684 999 - -
Stsc60533g00016 1445 FunFam ABC transporter B family member 1 1006 1255 - -
Stsc60533g00016 1445 SUPERFAMILY ABC transporter transmembrane region 37 348 IPR036640 GO:0005524|GO:0016020
Stsc60533g00016 1445 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 695 981 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60533g00016 1445 Pfam ABC transporter 1035 1184 IPR003439 GO:0005524
Stsc60533g00016 1445 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 51 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60533g00016 Stsc-Chr60533 65877 73223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60533g00016 33 1252 Calmodulin-binding Proteins AT2G36910 45.250 0.0 1040
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60533g00016 K05658 - gmx:100801771 1872.44