Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60532g00009 ATGGAAGCCATGTTTGTGATTGGCCTTGCAGACAAAGCGCACGTGCCCATTCTCACAATCTCAGAAATGAGCCCTTCTCTGTTATCTCTCCACAGCTCTTACTTGTTCCAAATCGAACAGCAAGATTATTACTTAGCTCAGGTGGAAGCCATAAGCGCCATTGTTCAAGCTTTTGGGTGGAAAGAAGTGGTTCCAGTATACGTGAACAACGGTTATGGTGAAGTTTTGATTGCATCCCTCACCAATTCTCTTCAGAAATCATACATCCGTGTTCCTTATCTGAGTGCCATTGATTTCTCAGCCACAGATGATGCCATTCAGAAAGAGCTTTACAAGCTCATGACTATGCAAACTAGAGTGTTTGTTGTTCACATGACACCCCGTGTTGCATCTCGTTTCTTCGCCATAACCAAAGAAATTGGCATGATGGATGAAGGTTATGTTTGGATTGTGACTGCTGCAATCGCTAACCTCTTCAACTCATTGGATTCTTCATTTATGGGATCCATGGAAGCTGCATTGGCTATAGCTGTTGAGAAACTTGACAGCACTCTTTTTGGCTTCATCACCAATGTGAGAAACGGTTCCAACAATGTGACGGATCTTGAAAACTTTGGGATCTCGCGAAATGGTGAGAAGCTGAGGGAAGCTTTGTCAAATGTTAAATTCAATGGTGTTGGTGGTGATGAGTTCAAATTAGTGGGTGGTGGGGAGTTAGAAGCATCGTCATCGTCGCCATTTGAGATAGTTAATGTGATTGGTAACAGCGAAAGAAACATTGGATTTTGGACGCCACAGGAAGGACTAATCAGAAACTTGGATGCAAAGAATTCATCAGTAACCGCAAAGGGGATTATAAGAGGAATTATATGGCCAGGGGATTCTTTCTCTGTTCCAAAGGGGTGGGAGATTCCCACAAATGGTAAAAAGTTAAGGATAGGAGTCCCAGTGAAAGATAATGGCCTCTCTGAATTTGTGAAAGTAATCCATGACCATGCTACCAATTCTACAAAGGTCACTGGCTTCTGCATTGATGTGTTTAATGCTGTGGTAGAAGCGTTGCCTTATGCTCTTCCATTTGAACTTATTCCATTTGAAAACTCCAGTGATGATGATGAGATGGCAGGAACATATGATGAATTGATCACCCAAGTTTATTACGGAAAGTTTGATGCTGTGGTGGGGGACACAACGATTACAGCAAACAGGTCCATGTTTGTTGATTTCACATTGCCCTACACAGAATCTGGTGTGACTATGGTTGTTCCAGTAAGAGACAACAGAAAGAAGAATGCATGGGCCTTCTTGAAGCCTTTGACATGGGACCTTTGGGTAACAATATTTTGTACATTTTTATTCATAGGATTTGTTGTTTGGGTGCTTGAGCACAGAATCAACATAGACTTCACAGGGCCTCTGCTTTATCAAATTGGCACTAGCTTGTGGTTTTCCTTCTCAACCATGGTATTTTCTCATCAGGAGAGAGTGGAGAGCAACTGTGGAAGATTTGTGGTGATAATATGGATTTTTGTTGTTCAAATTCTGGTCCAAAGCTACACTGCAAGCCTGACCTCACTCTTAACAGTCGAACAATTACGCCCAGCAATTACAGATGTTCATCATCTCCTGAAGAATAGGTTGAATGTTGGTTATTTGAAAGGTTCTTTTGTTCATGAAATGTTGAAGGATTTGGGGTTCCATGAAAACCAGCTCAAGATTTATAAATCTGCAGAAGAATGCAACGAACTCTTCACTAAAGGAAGTGCCAACGGGGGCATCGATGCTGCGTTTGATGAAGTCCCCTACGTGTTGCACCTTCTTGGAACTTATTGCTCCAAGTATGCCATGGTTGAGCCAAGATTCCAAACCGGTGGCTTTGGCTTCGTGTTTCCAAAAGGGTCACCTCTTGTGGGAGACATATCAAGGGCAATCTTGAATGTGAGTGAAGGAGGCCAAATGAGAAAATTTGAGAATGCATGGTTGAATAGAAGTAGTTGTGAAGATTCCAATAATAACAATGCAGCAAAAGTATCTTCTTCTGCAAGCCTAGGACTAGAAAGCTTCTGGGGTTTGTTCTTGGTTGTAGGTGTTTCTTGCTTAATAGCACTCATTATCTGTTTAGCCACATTCATATATGATAATAAACAAATTTTGTCAAACCATAATAATAGCTCCATAAGAAGACGCGTTGGAAAGCTGCTAAAAACCTTCACTGAGAAAGATCTGAGCGCCCACACTCTCAAGAGAAGGGATTCATGTGTAACTAGTTGTCCTGCCACGTCAGCACCATCAGCAAGTACGCCTTGCCCTCCAATTAGTCCATCCAGTAACACAGACTCAAGCTTTTCGGGCATTCTAGATGCTCATCATCAACACAAACCTGCTGCACAAGAGCCTTCTGCTGCCATTACAGTGACTGGGATACAACAAATTAAGCCACATAGATCCCTCTAG 2454 0.4226 MEAMFVIGLADKAHVPILTISEMSPSLLSLHSSYLFQIEQQDYYLAQVEAISAIVQAFGWKEVVPVYVNNGYGEVLIASLTNSLQKSYIRVPYLSAIDFSATDDAIQKELYKLMTMQTRVFVVHMTPRVASRFFAITKEIGMMDEGYVWIVTAAIANLFNSLDSSFMGSMEAALAIAVEKLDSTLFGFITNVRNGSNNVTDLENFGISRNGEKLREALSNVKFNGVGGDEFKLVGGGELEASSSSPFEIVNVIGNSERNIGFWTPQEGLIRNLDAKNSSVTAKGIIRGIIWPGDSFSVPKGWEIPTNGKKLRIGVPVKDNGLSEFVKVIHDHATNSTKVTGFCIDVFNAVVEALPYALPFELIPFENSSDDDEMAGTYDELITQVYYGKFDAVVGDTTITANRSMFVDFTLPYTESGVTMVVPVRDNRKKNAWAFLKPLTWDLWVTIFCTFLFIGFVVWVLEHRINIDFTGPLLYQIGTSLWFSFSTMVFSHQERVESNCGRFVVIIWIFVVQILVQSYTASLTSLLTVEQLRPAITDVHHLLKNRLNVGYLKGSFVHEMLKDLGFHENQLKIYKSAEECNELFTKGSANGGIDAAFDEVPYVLHLLGTYCSKYAMVEPRFQTGGFGFVFPKGSPLVGDISRAILNVSEGGQMRKFENAWLNRSSCEDSNNNNAAKVSSSASLGLESFWGLFLVVGVSCLIALIICLATFIYDNKQILSNHNNSSIRRRVGKLLKTFTEKDLSAHTLKRRDSCVTSCPATSAPSASTPCPPISPSSNTDSSFSGILDAHHQHKPAAQEPSAAITVTGIQQIKPHRSL 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60532g00009 817 Gene3D - 432 570 - -
Stsc60532g00009 817 SUPERFAMILY Periplasmic binding protein-like II 289 663 - -
Stsc60532g00009 817 MobiDBLite consensus disorder prediction 759 779 - -
Stsc60532g00009 817 Pfam Bacterial extracellular solute-binding proteins, family 3 336 662 IPR001638 -
Stsc60532g00009 817 SUPERFAMILY Periplasmic binding protein-like I 3 303 IPR028082 -
Stsc60532g00009 817 Gene3D - 311 431 - -
Stsc60532g00009 817 CDD GluR_Plant 309 661 - -
Stsc60532g00009 817 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 7 728 IPR015683 -
Stsc60532g00009 817 FunFam Glutamate receptor 432 562 - -
Stsc60532g00009 817 Gene3D - 44 310 - -
Stsc60532g00009 817 PIRSF IGluLR_plant 1 174 IPR017103 -
Stsc60532g00009 817 PIRSF IGluLR_plant 170 797 IPR017103 -
Stsc60532g00009 817 Gene3D - 609 668 - -
Stsc60532g00009 817 Pfam Ligand-gated ion channel 663 698 IPR001320 GO:0015276|GO:0016020
Stsc60532g00009 817 FunFam Glutamate receptor 310 432 - -
Stsc60532g00009 817 SMART GluR_14 310 663 IPR001320 GO:0015276|GO:0016020
Stsc60532g00009 817 FunFam Glutamate receptor 43 204 - -
Stsc60532g00009 817 Pfam Receptor family ligand binding region 3 164 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60532g00009 Stsc-Chr60532 58408 63650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60532g00009 1 770 Ion Channels AT2G29120 45.930 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60532g00009 K05387 - qsa:O6P43_019170 870.152