Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60532g00003 ATGGCTGAAACACTTGTTGTTGGAGCTTTAGTTTCTGGCTTTGCCAACGTTGTTCTTGACAGGCTCATTTCACCTGAGTTTGTCAACTTAGTGGCGGGAAAGAAGCTGAACCGGAAGTTGGTTGAGAGGCTGAGGACTGCTCTCTTGGCTGCCGAAGCTCTGGTTGCTGACGCCGAGCAGAAGCAGTTTGGAAACAATCTTGTACGGAAATGGCTTGATAGTCTCAGGGATGCTCTCTACACTGCTGATGACTTGCTCGACCGTGTCCAAATCAAAGCTCAAATTCGCAGCAAGGTACGCACTCATCTTCCTAGCTTCCTTAATTTGTCTGATAGGAAGATGGTGACTCAGATAGAAGACGTGGTTGAAAGAATAGAGGATCTTGAGAAACTCAAAGATAGCCTTGGTCTGAAAGAGATTCCAACGGGTAGTTCTTCATGGAGACCCCCATCCACTTCTCTTGTAAAGGGGAATGTGTATGGCAGGGATGATGACAAACAGGCATTAATCAAGATGCTGAATGACAACAATGATCATAAGTTTTCCGTCATCCCTCTTGTTGGTATGGGCGGGGTTGGTAAAACTACTTTAGCACAATGGTTGTACAACAATGAAGATCTCATGAAGGGGTTTGATCTAAAAGCTTGGATTTGTGTTTTTGTAAATTTTGATGTCGTTGACACTACGAAGAATGTTATAAAGGGGATCAATGCAGGTGTATGTAGTCTTGATGGCTTCGATTTACTTCAACAAGATTTGAAGGGAAAACTGTCGGGAAAGAAGTTCTTCATTGTTTTGGATGATGTTTGGAGTGATGATGGTGACATGTGGAATAGTTTCATTACTCCTTTTCAACATGGGAGAAATGGAAGCACTGTTCTTCTAACCACCCGCAAGAAAAATATTGGTCCATCAGTCCAAAATTATAACTCTTACCCTCTCGAGGCGTTGTCAGATGATTATTGCTGGTCTATTTTTGCGGACAATGCATCCTTTCCTGAATCAAATGGGAGTTCAGAACTGGAAGGAATTGGTAGAAAGATTGTCGAGAGGTGTGATGGTTTGCCATTAGCTGCAGAAACACTTGGACGCTTGTTACGCATGAAGCATGACGTTAGGGAATGGAATAAAATACTATCAAATCATCAATTTGATAAAAATGAATTAATTTTGCTGTGGATGGCTGAAAATCTTTTACGACCACCAAAGAGGGGAGAGACTCTAGAAGAAGTTGGTTGTGAATGTTTTGATGACTTAGCTTCAAGACTATTTTTCAAGCAGGTTGAGAACGATGGTGGGAGGTATTTTGTGATGCATGATCTCATGCATGACTTGGCAACTTTTCTTGCTGGAAAATTTTATTGTAGATTATCAGAACAACTTGATGAAGAGGAAGAGGAAGAGATGAGGATTCTAACTCGTCATTTGTCATACTCATACGGTCAATCCTCTAATAAAATAGAATCTTTGAGGACATTCTTGTATATCAACGGCAGTCCTTCTTCTATTCAGAAAGAAAGAACAACGTTATCATGTGACGTATTGTCAAAGAATAAATACTTGAGAGTTTTGTCCTTTGATAATCTTAGGATACTTCCTGATTCAATAGGTAAATTAATCCACTTGCGCTATTTGAATCTCTCTCGAAGTGCTGTTAAGACGTTGCCAGAGTCACTATGCAACTTGTATAATTTACAAACATTAAAGCTAGAATATTGTTGGAAGCTGACCATGCTGCCCAATGACATCTATAATCTTGTGAATTTGCGGCATCTTGATATAACGGGTACTCCTCTAGAAGAAATGCCAAAAGGAATAGGCAAATTGAAACATTTGCACATTTTAAGCAACTATATCGTAGGCAAGCAAGAAGACAATGGAATCCAAGAGTTAGGAGGGCTTTTGAATCTTCATGGATCATTTAAGATTAAAAAATTGGAGAATGTTGTTGATGTCAAACAGGCAAGGAATGCAAGGATAATAGACAAGAAGCACATTGAGAACTTATGGTTGGAATGGTCTTCAGGTGATGATATGGTTTCAAACACACAAATTGACAGAGATATACTCCACAACTTGAAACCGCACCCTGGCTTGAAAGAATTGAAAATTGATGGATACATGGGTGTAATATTTCCAAACTGGGTTGGACATTCACCCTACCAAAACATAACATTCCTCCTACTAAGGTATTGCAAGAATTGCTGCATGCTGCCTACACTTGGACAGCTACCATCTCTTAAGTCCCTATGCATTGTAGCTTTTGATCAGCTCAAGAGTGTTGGCATGGAGTTTTACAAGAATGAAGGAGATCAACATTCTTCGTCTATTGTACCGTTTCCCTCACTGGTCACATTGGAATTCTGGAATATGCCATGCTGGGAGGAGTGGCACTTACCTGACTCAGAAGCTTTTCCTCAGCTTAAGACGCTTGAAACAAGACTTTGTCCAAAGTTAAAGGGAGATATGGTTAATGAGGTATTAATGAGAATTGTTTCTTCCTCATCAGATGTTTCGAAAGTGCGCAAACTGGAAATACGAGAAGATCATACACATGAAGCATGGAATAAAGAGATGTCGCTTGATGGGGATAGTTTATCAATTACTGGATATCAATCTGTGGTGGAGTCTGCATATAAGGCAAGGATCATCCATCATCTAACTTCCCTCCAAGAAATACACATCTCGGGGTGTTCATCTGCTGTATCCTTGAGAGGCAATTGTTTACCCAAATCTTTGCAAAAGCTCAAAATCTCATATTGCAAGAAACTGGAATTCCCCCAGCAAGAACAGCTCAAGTTTGATTTGGCAGAGCTAGAAATATTTTCTAGTTGCGATTCGCAGACCTCGTTCTCCTTAGATCCCTTTCCCAATCTCAAGGATCTCAAGATAATATCCTGCAAGAATCTGGAATCAGTTTCAATGTCAGAGCCACCACACTCTACTCTTCAAAGTCTCATCATCTGTGAATGCCCCGAATTTGTGTCATTTACAAGAGAAGGTCTGGCTGCACCAAACTTGACTCATCTCCGCGTTGCACGTTGCTCAAAGTTGGAGTCATTGCCACATGACATGAATAATCTTCTCCCAAGTTTACAGTCTCTGGACATACAAGGTTGCCCAAACATTTGCAGGTTACCAGTGGGTGGTTTACCGCCTAACTTGAAAGAGCTTACTGTGGGAAGTTGTGATCAACAGCTGAGGGCTTTATCATCCATGAACAACTTGGATGCCTTCACTCATCTCACCATTTGTGGTCATAGCTGTGAGAGCATAACAAAATCATATCCGGAGGTGGGTTCCCTGCCTCACCTTCCCTCCCTTACCACTCTCAAGATAAGTTTTTTTCAAAATCTGGAAAATTTGGAGTGCAACCATCTTCTCCACCTCACCTCCCTCCAACAATTACACATTCAATGGTGTATCAAGCTGGAGAATATTGCAGGAGAGAAGCTTCCTTCCTCTCTGTTACTACTTCAAATTGAGGAGTGTGATTTGCTGGGAGAACATTGCAAGAACAAGCATCAACAAATTTGGCCAAAAATTGAACACATCCCCACCATTCTAGTTGATGGCAACCAAATTTTCTGA 3591 0.4091 MAETLVVGALVSGFANVVLDRLISPEFVNLVAGKKLNRKLVERLRTALLAAEALVADAEQKQFGNNLVRKWLDSLRDALYTADDLLDRVQIKAQIRSKVRTHLPSFLNLSDRKMVTQIEDVVERIEDLEKLKDSLGLKEIPTGSSSWRPPSTSLVKGNVYGRDDDKQALIKMLNDNNDHKFSVIPLVGMGGVGKTTLAQWLYNNEDLMKGFDLKAWICVFVNFDVVDTTKNVIKGINAGVCSLDGFDLLQQDLKGKLSGKKFFIVLDDVWSDDGDMWNSFITPFQHGRNGSTVLLTTRKKNIGPSVQNYNSYPLEALSDDYCWSIFADNASFPESNGSSELEGIGRKIVERCDGLPLAAETLGRLLRMKHDVREWNKILSNHQFDKNELILLWMAENLLRPPKRGETLEEVGCECFDDLASRLFFKQVENDGGRYFVMHDLMHDLATFLAGKFYCRLSEQLDEEEEEEMRILTRHLSYSYGQSSNKIESLRTFLYINGSPSSIQKERTTLSCDVLSKNKYLRVLSFDNLRILPDSIGKLIHLRYLNLSRSAVKTLPESLCNLYNLQTLKLEYCWKLTMLPNDIYNLVNLRHLDITGTPLEEMPKGIGKLKHLHILSNYIVGKQEDNGIQELGGLLNLHGSFKIKKLENVVDVKQARNARIIDKKHIENLWLEWSSGDDMVSNTQIDRDILHNLKPHPGLKELKIDGYMGVIFPNWVGHSPYQNITFLLLRYCKNCCMLPTLGQLPSLKSLCIVAFDQLKSVGMEFYKNEGDQHSSSIVPFPSLVTLEFWNMPCWEEWHLPDSEAFPQLKTLETRLCPKLKGDMVNEVLMRIVSSSSDVSKVRKLEIREDHTHEAWNKEMSLDGDSLSITGYQSVVESAYKARIIHHLTSLQEIHISGCSSAVSLRGNCLPKSLQKLKISYCKKLEFPQQEQLKFDLAELEIFSSCDSQTSFSLDPFPNLKDLKIISCKNLESVSMSEPPHSTLQSLIICECPEFVSFTREGLAAPNLTHLRVARCSKLESLPHDMNNLLPSLQSLDIQGCPNICRLPVGGLPPNLKELTVGSCDQQLRALSSMNNLDAFTHLTICGHSCESITKSYPEVGSLPHLPSLTTLKISFFQNLENLECNHLLHLTSLQQLHIQWCIKLENIAGEKLPSSLLLLQIEECDLLGEHCKNKHQQIWPKIEHIPTILVDGNQIF 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60532g00003 1196 Gene3D - 152 311 IPR027417 -
Stsc60532g00003 1196 Coils Coil 41 61 - -
Stsc60532g00003 1196 Gene3D Ribonuclease Inhibitor 481 861 IPR032675 -
Stsc60532g00003 1196 SUPERFAMILY L domain-like 884 1181 - -
Stsc60532g00003 1196 PRINTS Disease resistance protein signature 885 901 - -
Stsc60532g00003 1196 PRINTS Disease resistance protein signature 183 198 - -
Stsc60532g00003 1196 PRINTS Disease resistance protein signature 256 270 - -
Stsc60532g00003 1196 PRINTS Disease resistance protein signature 352 366 - -
Stsc60532g00003 1196 Pfam Rx N-terminal domain 26 97 IPR041118 -
Stsc60532g00003 1196 Pfam NB-ARC domain 163 383 IPR002182 GO:0043531
Stsc60532g00003 1196 SMART LRR_typ_2 586 609 IPR003591 -
Stsc60532g00003 1196 SMART LRR_typ_2 539 562 IPR003591 -
Stsc60532g00003 1196 Coils Coil 118 138 - -
Stsc60532g00003 1196 Gene3D - 316 392 IPR042197 -
Stsc60532g00003 1196 PANTHER DISEASE RESISTANCE PROTEIN RP 45 788 IPR044974 GO:0006952
Stsc60532g00003 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 385 IPR027417 -
Stsc60532g00003 1196 Gene3D - 17 130 - -
Stsc60532g00003 1196 Gene3D Ribonuclease Inhibitor 881 1185 IPR032675 -
Stsc60532g00003 1196 SUPERFAMILY L domain-like 437 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60532g00003 Stsc-Chr60532 25270 28980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60532g00003 188 616 WRKY Transcription Factor Family AT5G45050 23.904 8.37e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60532g00003 - - aip:107622623 1641.71