Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60532g00002 ATGGCTGAAGCCCTTGTTGTTGGAGCTTTAGTTTCTGGTTCCATAAGCCTTGTTCTTAACAGGCTCATTTCACCTGAGTTTGTCAACTCGGTGGTGAGCAAGAAGCTGGACTGGAAGTTGGTTGAGAGGCTGAAGACTGCTCTCCTTGCTGCAAAAGCTCTGGCTGCTGACGCTGAGCAGAAGCAGTTTGGAAATGAATATGTGAGGGAATGGCTTGATAGTCTCAGGGATGCTCTCTACACTGCTGATGACTTGCTGGACCGTGCCTTAATCAAAGCTGAAATTCGCAAGAAGGTACTTATTCCTCTTCCTTACTTCCTTAGTTGCTCTAATAGGAAGATGGTGACTAAGATAGAAGAGGTGGTTGAAAGAATAGAATATCTTGAGAAACGAAAAGATGCCCTTCGTCTAAGAGACATTCCAACAGGCAGCTCCTCTTGGAGACCTCCATCCACTTCTCTTGAAAGGGGAACTATGTACGGCAGGGATGGTGACCAACAGGCATTAATCAAGATGCTAAAAGACAACAAGGATCATAACTTGTCCGTCATCTCTATTGTTGGTATGGGCGGGGTTGGTAAAACCACTTTAGCAAAATGCCTGTACAACAATAAGGATTTGATGAATGATTTTGATCCGAAAGCATGGATTTGTGTTTCTGAAAATTTTAATGTCACTGAGATTACAAAAAGTATTATAAAGGAGATCAATTCAGGTGTTTGTAGTCTTGACAGTCTCGATTTACTTCAACAAGATTTGAAGGAAAGACTGTCAAAAGGAACGAAGAAGTTCTTCATTGTTTTGGATGATGTTTGGAGTATCGATGGTGACATATGGAAAGATTTTATCATCCCTTTTCAACATGGGCCAAAGTCAACCACTATTCTTCTAACTACCCGCATGAAAAATCTTGATCCGATAGTCCAAAATCATAACTCTTACCTTCTCGAGGGGCTGTCAGAAAGTTATTGTTGGTCTATTTTTGCGGACAATGCATCCTTTCCTGAATCAAATGGGAGTTCAGAACTTCAAGAAATAGGTAAAGAGATTGTCAAAAAGTGTGCTGGCTTGCCGCTTGCTGCAGAAACACTGGGACGCTTGTGCTCAAAGCATGATGTTGAGAAATGGAAATCAATACTAGAGAGTGACACCTGGGAATTTCCTATGATAGATAGTAAGATTATTCCTGCATTGTTAATAAGTTACAATGAACTTCCTGCACATTTAAAACGCTGCTTTGTTTATTGTTCATTGTATCCAAAAAGTTATCAATTTGATAAAAATGAGTTAATCTTGCTGTGGATGGCTGAAGATCTTTTACGGCCACCAAGGAGGAGAGAGACTTTAGAAGATGTTGGTCGTGAGTGTTTTGATGACTTGGCTTCAAGATTGTTTTTCAAGCCTCGTGAGAAGTATTTTGTGATGCACGATCTCATGCATGACCTGGCAACGTTTCTTGCTAGAGAATTTTATTGTAGATTATCAAAAGAACTTTGTGAAAAGGAGGAGATGTGGATTCGAACTCGTCATTGCTCATTCAATCATCCAATCTCTAAAAAAGGATATTCCTCAGATAAAATAAAATATTTGAGAACCTTCTTGTATTTCAATGATGGTCACTCTTTTAGCAGGAAAGAAGGCACAAGGTTAACAGGTGGCATATTGTCAGAGAATAAATACTTGAGAGTTTTATCCTCTCATGCACTTAGTACTTTTCCTGGTTCAATAGTTAAATTGATCCACCTGCGCTATTTGAATCTCTCTGGGAGTGATTTTAAGGTGTTGCCGAAGTCTTTATGCAACTTGGGCAATCTACAAACTTTGAAGTTACAAAGGTGTTCTTCCCTAACTATGCTGCCTAGTAGCTTAGGTGAATTGATCCACCTGCACTATTTGGATCTCTCCATCAGTGCTATTAAGACATTGCCAGAGTCACTATGCAAGTTGTCTTATTTACAAACATTAAAGCTAGGAGAGTGTTCAAAGCTGACTATGCTGCCCAATGACATGTGTAATCTTGTGGATCTACGGCATCTGGATATATGGGGTACTCCTATAAAAGAAATGCCAAAGGGAATGAGCAAATTGGAAAAATTGCACATTTTAAGTAACTTTGTGGTGGGGAAGCATGAAGACAATGGAATCCAAGAGTTGGGAGGGCTTTCAAATCTTCATGGATTATTTGTGATTCAGAAATTGGAGAATGTTGTTGATGTCAATCATGCAAGGAAAGCCAATATGAAAGCCAAGGAGCACATTGACAACTTATTGCTGGAATGGTCTTCAGGCGATGATATGGTTCCAGAGTCAGACTCACAAACTGAAAGAGATATACTCTCCTGCTTGCAACCATACCATGGCTTGAAAGTGCTGGGAATCAAGGAATACAAAGGTACAATATTTCCAGATTGGGTTGGGCATTCCTCCTACCAAAACATGACAAGTGTATCTCTGTTGGATTGCAAGAATTGCTGCATGCTGCCTTCACTTGGACAACTGCCATGTCTTAAGTCCCTCAACATTGAAGGCTTTGATAAGCTCAAGAGTGTAGGCATGGAGTTTTACAAGAATGAAGGAGATCAACATTCTTCGCCTATTGCACTGTTTCCCTCATTGGAGAGTTTGGAGTTTGATAACATGCAGTGTTGGGAGGAGTGGCACTTACCTGACTCACAAGGTTTTCCTAAGCTCGAGTATCTTCATATAAGAGATTGCCCAGTGTTAAAGGAAAATATGCTTAATCACGTATTAATGAGAATCATTTCTTCCTCATCGGATGTTTTGAAAATGCTCAAACTCGAAATACAAGAAGGTCATGAAGCTTGGGGTAAAGAAATGAGACTTGATGAGGATAGTTTATCAATTACGGGATGTGAGTCTGTGTTGGAGTATGCAATTGTCATCAGCCATCTAACTTCCCTCCAAGAAATACACATCTCAGAGTGTTCATCTGCTGTATCCTTGCATGGCAATTGTTTACCCAAATCTTTGCAAAAGCTCACAATCTGGAAGTGCAGCAAATTGGAATTCCCGGAGCAGCAGCAGCAGAAGTATGATAATTTGGCAGAGCTACAAATAGTAGACAGCTGCGATTCACTAACCTCATTGTCGTTGGATGCCTTTCCTGTTCTCAAGAATCTTGAGATAAGAGAGTGTTCAAATTTGGAATCAGTTTCAATGTCAGAGCGACCATACACTGCTCTTCAACGTCTCACCATCTCATTTTGCAACAAATTAGTGTCATTTACAGGAGAAAGACTGGATGCACCCAACTTGACTCATTTTGATGTCAGCTTTTGCTTCAACTTAGGGGCACTGCCGAGCCACATGAATATTCTTCTCGCAAGTTTACAGTCTCTTGACATACGAGGTTGCCCAAACATTAGTAGGTTGTCAGAGGGTAGTTTGCCACCCAACTTGAAACAACTTAGTGTCGGGAAACGATGGAGGGATCTATTGTGGAAGACAAAATGA 3474 0.405 MAEALVVGALVSGSISLVLNRLISPEFVNSVVSKKLDWKLVERLKTALLAAKALAADAEQKQFGNEYVREWLDSLRDALYTADDLLDRALIKAEIRKKVLIPLPYFLSCSNRKMVTKIEEVVERIEYLEKRKDALRLRDIPTGSSSWRPPSTSLERGTMYGRDGDQQALIKMLKDNKDHNLSVISIVGMGGVGKTTLAKCLYNNKDLMNDFDPKAWICVSENFNVTEITKSIIKEINSGVCSLDSLDLLQQDLKERLSKGTKKFFIVLDDVWSIDGDIWKDFIIPFQHGPKSTTILLTTRMKNLDPIVQNHNSYLLEGLSESYCWSIFADNASFPESNGSSELQEIGKEIVKKCAGLPLAAETLGRLCSKHDVEKWKSILESDTWEFPMIDSKIIPALLISYNELPAHLKRCFVYCSLYPKSYQFDKNELILLWMAEDLLRPPRRRETLEDVGRECFDDLASRLFFKPREKYFVMHDLMHDLATFLAREFYCRLSKELCEKEEMWIRTRHCSFNHPISKKGYSSDKIKYLRTFLYFNDGHSFSRKEGTRLTGGILSENKYLRVLSSHALSTFPGSIVKLIHLRYLNLSGSDFKVLPKSLCNLGNLQTLKLQRCSSLTMLPSSLGELIHLHYLDLSISAIKTLPESLCKLSYLQTLKLGECSKLTMLPNDMCNLVDLRHLDIWGTPIKEMPKGMSKLEKLHILSNFVVGKHEDNGIQELGGLSNLHGLFVIQKLENVVDVNHARKANMKAKEHIDNLLLEWSSGDDMVPESDSQTERDILSCLQPYHGLKVLGIKEYKGTIFPDWVGHSSYQNMTSVSLLDCKNCCMLPSLGQLPCLKSLNIEGFDKLKSVGMEFYKNEGDQHSSPIALFPSLESLEFDNMQCWEEWHLPDSQGFPKLEYLHIRDCPVLKENMLNHVLMRIISSSSDVLKMLKLEIQEGHEAWGKEMRLDEDSLSITGCESVLEYAIVISHLTSLQEIHISECSSAVSLHGNCLPKSLQKLTIWKCSKLEFPEQQQQKYDNLAELQIVDSCDSLTSLSLDAFPVLKNLEIRECSNLESVSMSERPYTALQRLTISFCNKLVSFTGERLDAPNLTHFDVSFCFNLGALPSHMNILLASLQSLDIRGCPNISRLSEGSLPPNLKQLSVGKRWRDLLWKTK 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60532g00002 1157 Gene3D - 18 133 - -
Stsc60532g00002 1157 Coils Coil 41 61 - -
Stsc60532g00002 1157 Gene3D Ribonuclease Inhibitor 510 613 IPR032675 -
Stsc60532g00002 1157 PANTHER DISEASE RESISTANCE PROTEIN RP 622 877 IPR044974 GO:0006952
Stsc60532g00002 1157 SMART LRR_typ_2 579 602 IPR003591 -
Stsc60532g00002 1157 SMART LRR_typ_2 673 696 IPR003591 -
Stsc60532g00002 1157 SMART LRR_typ_2 626 649 IPR003591 -
Stsc60532g00002 1157 SUPERFAMILY L domain-like 474 907 - -
Stsc60532g00002 1157 Gene3D - 152 313 IPR027417 -
Stsc60532g00002 1157 Pfam Rx N-terminal domain 39 97 IPR041118 -
Stsc60532g00002 1157 Gene3D Ribonuclease Inhibitor 614 937 IPR032675 -
Stsc60532g00002 1157 Gene3D - 318 400 IPR042197 -
Stsc60532g00002 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 416 IPR027417 -
Stsc60532g00002 1157 Gene3D Ribonuclease Inhibitor 995 1148 IPR032675 -
Stsc60532g00002 1157 FunFam Probable disease resistance protein At1g63360 402 485 - -
Stsc60532g00002 1157 PRINTS Disease resistance protein signature 258 272 - -
Stsc60532g00002 1157 PRINTS Disease resistance protein signature 600 616 - -
Stsc60532g00002 1157 PRINTS Disease resistance protein signature 354 368 - -
Stsc60532g00002 1157 PRINTS Disease resistance protein signature 183 198 - -
Stsc60532g00002 1157 Pfam NB-ARC domain 166 381 IPR002182 GO:0043531
Stsc60532g00002 1157 SUPERFAMILY L domain-like 962 1145 - -
Stsc60532g00002 1157 Coils Coil 118 138 - -
Stsc60532g00002 1157 Gene3D - 401 485 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60532g00002 Stsc-Chr60532 12046 15937 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60532g00002 180 879 WRKY Transcription Factor Family AT5G45050 22.238 7.73e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60532g00002 - - aip:107622623 1500.34