Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60531g00005 ATGGCTCTACTTACTCTCATCTGCTCTCCTTCAATAACAAACTACCCCACACAATATCCTTTTCTTCAAAATCCTCCTTACTTCTCTTCCCAACATTATTCCATCAACAGCATCTGTTCCTTCTTGCACACACCTTACTCTAGAAGATCAAAATCAGGCACTAATAACTTCACTCTCACATTTGCCTCTGATTCTCTCCCATCATTTGTTTCTACTGATGAAGAAAAATATGAACCCAAGGTTGAGGAGTTTTCAAGAACAAGGATCATTGCTCAGAATGTTCCTTTTTCTAGTACCCAAGATGATATTCGCGCTTTATTTGAGAGGCATGGAAGGGTCCTCCATGTTGAGCTTTCCATGCATAACAAGACAAGGAACAGGGGTATAGCATTTGTGGAAATGGGTTCCCCAGAAGAGGCTCTTGAAGCTCTTAACAATCTCGAATCGTATGAGTTTGAGGGTCGCATACTGAATCTAGAATATGCTCGGCCCAAAAAGAAGAAAAGTCCTCCTACTGTGCAACCAAAGCCAGCAGTGACATATAACTTACTTGTTTCAAATTTTCCCTATGAAGTAAGGGCTAAGGATCTGAGAGAGTTTTTTAATTCAGGAAATAGTAGTGTTGTTTCTGCAGAGGTTATATTCTATGATAAGCCTAGAAAGTCTGCTGGTTATGGATTTGTGTCCTTTGAATCGGAGCAAGAAGCTCAAGAAGCGCTTTCGGAGTTCCAAGGAAAGATTTTTATGGGAAGGCCTCTTCGGGTGGCTCGCGGCAGACAATTTGTTAAACAAGTAGTTGAGCAGAGTGTTGCAAAAGTGGATGATGCTGATTGA 834 0.4113 MALLTLICSPSITNYPTQYPFLQNPPYFSSQHYSINSICSFLHTPYSRRSKSGTNNFTLTFASDSLPSFVSTDEEKYEPKVEEFSRTRIIAQNVPFSSTQDDIRALFERHGRVLHVELSMHNKTRNRGIAFVEMGSPEEALEALNNLESYEFEGRILNLEYARPKKKKSPPTVQPKPAVTYNLLVSNFPYEVRAKDLREFFNSGNSSVVSAEVIFYDKPRKSAGYGFVSFESEQEAQEALSEFQGKIFMGRPLRVARGRQFVKQVVEQSVAKVDDAD 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60531g00005 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 254 IPR000504 GO:0003723
Stsc60531g00005 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 156 IPR000504 GO:0003723
Stsc60531g00005 277 SMART rrm1_1 88 160 IPR000504 GO:0003723
Stsc60531g00005 277 SMART rrm1_1 182 256 IPR000504 GO:0003723
Stsc60531g00005 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
Stsc60531g00005 277 Gene3D - 168 264 IPR012677 -
Stsc60531g00005 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Stsc60531g00005 277 CDD RRM_SF 183 255 - -
Stsc60531g00005 277 Gene3D - 48 167 IPR012677 -
Stsc60531g00005 277 CDD RRM_SF 93 160 - -
Stsc60531g00005 277 SUPERFAMILY RNA-binding domain, RBD 87 257 IPR035979 GO:0003676
Stsc60531g00005 277 PANTHER OS02G0815200 PROTEIN 33 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60531g00005 Stsc-Chr60531 20056 22933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60531g00005 89 260 Eukaryotic Initiation Factors Gene Family AT2G36660 26.163 2.09e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60531g00005 - - qsa:O6P43_019606 272.322