Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60530g00008 ATGTCACCAACACAAATTGCCCCTTCTGTTACTTACTATCTTCTTTTCCCTGATTCTCATCACACAGCTGGAAACCGTAGTGCTGGGTACATGCTCTCCAAAGAGGTACAAGAAGCAGGTTTTGGAATTGAGCCAGATGAATTAGCCGAAATTGTTCGTTCCCATGACACAAAATCTTTGGAGCGGAATGAAGGAGTTGAAGGTTTAGCTAAGCGTGTTTGTGTGTCTCTGCAAGATGGTGTTCATTCACAAGATATTTCACACAGACAGAAAATCTACGGCTGTAATCGCTTCACGGAGAAGCCGCAAAGAAGCTTCTGGATGTTTGTTTGGGATGCAATGCAAGACTTGACACTCATGATCCTCATTGTGTGTGCTGTGATTTCAGTAGGTGTTGGAATATCAACAGAAGGTTTTCCAAAAGGTATGTATGATGGAGTCACAAGAGAGGGTAAAAGGCAGAAGGTTTCAATCTATGAACTTGTGGTGGGAGACATAGTTCATCTTTCAATAGGAGATGTAATCCCTGCAGATGGGATTTTCATATCAGGTTTCAGCTTGTTGATTGATGAATCAAGCTTATCTGGTGAGAGTGAAGCTGTGCATGTTGATAAAGAGAGGCCTTTTCTTCTGTCAGGGACTTCTGTTCAAGATGGTTCTGCAAAGATGCTAGTGACTTCTGTTGGTATGAGAACAGAATGGGGGAAATTGATGGATACTCTGAATGAAGGAGGTGATGATGAGACACCACTTCAGGTCAAGCTCAATGGTGTTGCCACAATTATTGGAAAGATAGGACTTGGTTTTGCAGTCCTAACATTCCTGGTTTTGACTGGCAGGTACTTGTTGGAGAAAGTACAACAACATGAGATCACTCATTGGTCCATTGATGATGCATCAAAGCTTCTCAATTTTTTTGCCACTGCTGTGATCATAATTGTTGTAGCAGTTCCTGAGGGACTTCCTTTGGCAGTCACACTAAGCCTTGCGTTCGCAATGAAGAAACTTATGAATGATAAGGCACTTGTAAGGCACCTTTCGGCGTGCGAAACGATGGGCTCGGCCGGTTGTATCTGCACGGATAAGACAGGAACCTTGACAACAAATCACATGGTTGTTGACAAGCTATGGATATGTGAACAAACTAAGGCAATAAAGAAAGGTGATGGGGAGAGTTTGTTCAAGAAGTTTGTTTCTGAAGAGATATTTGATCTCTTTCTGCAGTCTATATTTCAGAACACAGGCTCTGAGATTGTCAAAGGAGAAGACTGTAAGAACAAGATCATGGGAACGCCCACGGAAACAGCACTGCTGGAATTCGGATTGAATTTGGGAGGTGATTCTAAATCTTACAATGACAAGTACAAGATAATCAAGGTTGAGCCTTTCAATTCAACGAAAAAAAAGATGTCGGTGCTCGTGGCCCTTCCTGAGGGCACCATCAACAAGTCTAGAGCATTTTGTAAAGGAGCATCAGAAATAATTCTCAGGATGTGTAACAAGGTTGTTAGTGCAGATGGGAAAGTGGTGGATTTGAATGAAGAACAGAGAAAGAGCATCATGGAAGTCATAGATGGTTTTGCTTCTGAGGCTCTGAGAACACTCGGCATGGCCTTCAAGGATATGGAAGGATCTTCTTCTGAAGCTAATGCCATTCCGGAGGATAGCTACACATTGATAGCAATCATTGGAATCAAAGATCCAGTGAGACCTGGAGTTAAAGAAGCTGTGAAGACTTGTTTAGAAGCTGGAATCAGTGTTAGAATGGTAACTGGTGATAACATAAACACTGCTAAAGCCATTGCTAAAGAATGTGGTATCTTGACAGACGGAATTGCTATTGAGGGACCAGATTTCAGGAATAAAAGCCAGCAAGAGCTGGAGGAGATCATACCAAAACTACAGGTGATGGCTAGGTCCCTGCCACTTGACAAGCACAAATTAGTAACCCATCTGAGGAATGATTTTAATGAAGTTGTGGCAGTGACAGGTGATGGGACCAATGATGCTCCAGCATTGCATGAGGCTGATATTGGACTCGCCATGGGTATTGCAGGGACAGAGGTTGCAAAGGAGAATGCAGATGTGATTGTAATGGACGACAACTTCGCAACCATAGTGAATGTTGCCAAATGGGGCCGTTCTGTTTACATAAACATACAAAAGTTTGTTCAGTTCCAATTAACAGTCAACGTAGTAGCTCTCATGCTAAATTTTGTTTCAGCATGTGTCTCAGGGTCAGCTCCTCTTACTGCTGTTCAAATGCTTTGGGTGAACATGATCATGGACACACTTGGAGCATTAGCATTGGCTACAGAACCTCCCCATGATGGACTCATGAAGAGGACACCAATTGGAAAGGACACCAAATTCATCACCCCTGTGATGTGGAGGAACATAATTGGTCAGAGTATATATCAAACTGTTGTCCTGTTACTACTCAAATTTCGCGGGAAACAGATTCTCAAGCTCAGTGATACTGATTCTCCACTACTTCTCAATACTGTCATATTCAATGCCTTTGTGTTTTGCCAGGTGTTCAACGAGATAAATAGCCGTGACATGGAAAAGATCAACATTGTAAGAGGCATGTTCAGCAGCTGGGTATTCCTTCTGGTGATAGCATCAACAGTGATATTCCAAGTGATAATAGTTGAGTTCTTAGGTACATTTGCACAAACAGTGCCACTGAGTAAGGACTTGTGGTTATTCAGCGTGCTGATTGGTGCAGTTAGTTTAGTGATAGCTGTTGTCCTAAAATGCATCCCTGTTGGTACCACTGACTCTCACTACCAAGCTACTTCTCATGATGGCTATGAGCAGCTACCAACTGGACCTGACATGGCATGA 2850 0.427 MSPTQIAPSVTYYLLFPDSHHTAGNRSAGYMLSKEVQEAGFGIEPDELAEIVRSHDTKSLERNEGVEGLAKRVCVSLQDGVHSQDISHRQKIYGCNRFTEKPQRSFWMFVWDAMQDLTLMILIVCAVISVGVGISTEGFPKGMYDGVTREGKRQKVSIYELVVGDIVHLSIGDVIPADGIFISGFSLLIDESSLSGESEAVHVDKERPFLLSGTSVQDGSAKMLVTSVGMRTEWGKLMDTLNEGGDDETPLQVKLNGVATIIGKIGLGFAVLTFLVLTGRYLLEKVQQHEITHWSIDDASKLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNHMVVDKLWICEQTKAIKKGDGESLFKKFVSEEIFDLFLQSIFQNTGSEIVKGEDCKNKIMGTPTETALLEFGLNLGGDSKSYNDKYKIIKVEPFNSTKKKMSVLVALPEGTINKSRAFCKGASEIILRMCNKVVSADGKVVDLNEEQRKSIMEVIDGFASEALRTLGMAFKDMEGSSSEANAIPEDSYTLIAIIGIKDPVRPGVKEAVKTCLEAGISVRMVTGDNINTAKAIAKECGILTDGIAIEGPDFRNKSQQELEEIIPKLQVMARSLPLDKHKLVTHLRNDFNEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVMDDNFATIVNVAKWGRSVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHDGLMKRTPIGKDTKFITPVMWRNIIGQSIYQTVVLLLLKFRGKQILKLSDTDSPLLLNTVIFNAFVFCQVFNEINSRDMEKINIVRGMFSSWVFLLVIASTVIFQVIIVEFLGTFAQTVPLSKDLWLFSVLIGAVSLVIAVVLKCIPVGTTDSHYQATSHDGYEQLPTGPDMA 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60530g00008 949 MobiDBLite consensus disorder prediction 930 949 - -
Stsc60530g00008 949 SUPERFAMILY Calcium ATPase, transmembrane domain M 64 923 IPR023298 -
Stsc60530g00008 949 SUPERFAMILY Calcium ATPase, transduction domain A 147 240 IPR008250 -
Stsc60530g00008 949 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 365 573 IPR023299 GO:0000166
Stsc60530g00008 949 PANTHER CATION TRANSPORTING ATPASE 39 147 - -
Stsc60530g00008 949 Pfam haloacid dehalogenase-like hydrolase 357 677 - -
Stsc60530g00008 949 CDD P-type_ATPase_Ca_PMCA-like 86 796 - -
Stsc60530g00008 949 Gene3D - 356 708 IPR023214 -
Stsc60530g00008 949 SUPERFAMILY HAD-like 358 768 IPR036412 -
Stsc60530g00008 949 PRINTS H+-transporting ATPase (proton pump) signature 663 679 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60530g00008 949 PRINTS H+-transporting ATPase (proton pump) signature 520 538 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60530g00008 949 PRINTS H+-transporting ATPase (proton pump) signature 695 720 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60530g00008 949 PRINTS P-type cation-transporting ATPase superfamily signature 687 699 - -
Stsc60530g00008 949 PRINTS P-type cation-transporting ATPase superfamily signature 359 373 - -
Stsc60530g00008 949 PRINTS P-type cation-transporting ATPase superfamily signature 663 682 - -
Stsc60530g00008 949 PRINTS P-type cation-transporting ATPase superfamily signature 561 572 - -
Stsc60530g00008 949 PRINTS P-type cation-transporting ATPase superfamily signature 583 593 - -
Stsc60530g00008 949 PRINTS P-type cation-transporting ATPase superfamily signature 190 204 - -
Stsc60530g00008 949 SMART Cation_ATPase_N_a_2 60 134 IPR004014 -
Stsc60530g00008 949 ProSitePatterns E1-E2 ATPases phosphorylation site. 361 367 IPR018303 -
Stsc60530g00008 949 Pfam E1-E2 ATPase 147 337 - -
Stsc60530g00008 949 FunFam Calcium-transporting ATPase 141 242 - -
Stsc60530g00008 949 Gene3D - 147 242 - -
Stsc60530g00008 949 Pfam Cation transporter/ATPase, N-terminus 63 129 IPR004014 -
Stsc60530g00008 949 Gene3D - 369 568 IPR023299 GO:0000166
Stsc60530g00008 949 FunFam Calcium-transporting ATPase 561 708 - -
Stsc60530g00008 949 FunFam Calcium-transporting ATPase 369 568 - -
Stsc60530g00008 949 SFLD C1.7: P-type atpase like 341 715 - -
Stsc60530g00008 949 FunFam Calcium-transporting ATPase 680 926 - -
Stsc60530g00008 949 Pfam Cation transporting ATPase, C-terminus 748 921 IPR006068 -
Stsc60530g00008 949 NCBIfam HAD-IC family P-type ATPase 294 384 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60530g00008 949 NCBIfam HAD-IC family P-type ATPase 629 751 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60530g00008 949 Gene3D - 243 922 - -
Stsc60530g00008 949 NCBIfam calcium-translocating P-type ATPase, PMCA-type 147 924 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc60530g00008 949 SFLD p-type atpase 341 715 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60530g00008 Stsc-Chr60530 83097 87343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60530g00008 23 946 Primary Pumps ATPases AT3G57330 66.667 0.0 1287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60530g00008 K01537 - gmx:100801260 1486.86