Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60530g00002 ATGTTGGAGCTGCAATTTCAATGGACTACTTCTAAGTTTTTCTATAAAGTGCTGATGCGGCAAAATGTTCAGCTTTGTAGTCACTTGTGGTTTAGTTATTGTGTGAGAGGCTTTCAAGCGTTTTTGGCCTTCGCCAAGAACGCTTCAAATTATCTTCATTTTGTTGCTGCTGTAAGAAAATTTCTCTTTGCCAAATATTATCCTCGCCTTATGGATTCAGGGTCCCCCTACCAATGGATAAGGGAGCTGAGATTAGAAGATAGCAACACCTTAAATCCATTTGATCTTCTTTATGAATGTGCCAAGTTTGTTGCATCAGGAAGCATAAAGAATGCAGACATAGCACTTGAATACATCTCTCACCAGCTGTCTCCGGACGGCGCGGCCGCGCAGCGCACCGTCACTTATTTCAGCGAAGCTCTAGCTTCCAAGATAGTCAAGAATCTTCCAGGAGTAGACAAAGCTCTTAACTCCTCAAAGAGACTAACTGCTTCTGAAGAAATCCTTGTCCAGAACTACTTCTATGAGTTGTTTCCATTTCTGAAATGTGCTTACTTGACTGCAAATCAAGTCATTGTTAAAGCCATGGAAGGTGAAAGAGTTGTTCATATCATTGATCTGCATTGTGCAGAACCTGTTCAATGGATTAACCTCTTGATGACATTGAATGATCGTCCTGAAGGACCTCCTCATTTGAGAATCACAAGCATTCATGATAAGAAAGAGGTTTTAGATCAGATGAATTCTAGTTTGACAAGAGAAGCTGAGAAATTGGACTTTCCTTTGCAGTTCAATCCTATTGTTAGCACTTTAGAAGATCTTGACATTGATAGGTTGCCGGTTCGAACCGGCGAGGCGCTTGCAATTTGTTCTGTTTTGCAGCTGCATCGCCTTCTGGCGACGGATGATGAAGTTCTAGGGAGGAATTCTCCGGCTGCATCGATGAATCTGCATAGAGCAGTGCATATGAACCGGAGAACTTTCGCCGAATGGCTCGAAAGAGACATGATGAATTCATATATTTCGAGTCCTAACTCTGCTTTGTCCCCTCCTCCTCTGTATCCTTCTCCTAAGATGGAGGCATTCTTAAGAGATATTCGGAAATTGCAGCCGAAATTAATGGTGATTACTGAACAAGAGACTAATCTTAATGGATGTAGTCTTGTGGAGAGGGTTGAGAAGGCCTTGTACTTCTACAGCGCCTTGTTCGATTGCTTGGATTCGACCGTGCGAAGAACTTCCTTGGAGAGGAAGAAAGTTGAGAGTTTGCTGCTTGGAGAGCAGATAAAGAACATCATTGCATCTGAGGGGTTTGAGAGGAAGGAGAGGTATGAGAAGCTCGAGAATTGGATTCGGCGGCTCGATATGGCCGGATTTGTGAGGCTGCCGTTGAGGGACAATGATAAGTTGCATGCTAAGGAGGTTCTCCACAACTATGGACACAAATATATGATTAGAGAAGGGCATGGTTGCTTACTTGTTTGTTGGGGTGATAGACCCCTTTTCTCCATTTCAGCATGGAGTTTTAGAGGATTGAACCTTTCTTTATAA 1551 0.4294 MLELQFQWTTSKFFYKVLMRQNVQLCSHLWFSYCVRGFQAFLAFAKNASNYLHFVAAVRKFLFAKYYPRLMDSGSPYQWIRELRLEDSNTLNPFDLLYECAKFVASGSIKNADIALEYISHQLSPDGAAAQRTVTYFSEALASKIVKNLPGVDKALNSSKRLTASEEILVQNYFYELFPFLKCAYLTANQVIVKAMEGERVVHIIDLHCAEPVQWINLLMTLNDRPEGPPHLRITSIHDKKEVLDQMNSSLTREAEKLDFPLQFNPIVSTLEDLDIDRLPVRTGEALAICSVLQLHRLLATDDEVLGRNSPAASMNLHRAVHMNRRTFAEWLERDMMNSYISSPNSALSPPPLYPSPKMEAFLRDIRKLQPKLMVITEQETNLNGCSLVERVEKALYFYSALFDCLDSTVRRTSLERKKVESLLLGEQIKNIIASEGFERKERYEKLENWIRRLDMAGFVRLPLRDNDKLHAKEVLHNYGHKYMIREGHGCLLVCWGDRPLFSISAWSFRGLNLSL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60530g00002 516 ProSiteProfiles GRAS family profile. 84 508 IPR005202 -
Stsc60530g00002 516 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 90 503 IPR005202 -
Stsc60530g00002 516 Pfam GRAS domain family 95 507 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60530g00002 Stsc-Chr60530 20346 22178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60530g00002 68 510 GRAS Transcription Factor Family AT1G50420 49.669 1.37e-148 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc60530g00002 GRAS 9.5e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60530g00002 - - gmx:100779726 591.652