Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60527g00012 ATGGCCGGAACCTCGACGACGCCGGAGAAGTCGGCGACGGCGATGGCACTCATGTCCCCGACGTGCTCACGGTCGGTAACGCAGACGGTGAACGGCTCGCACAAGTTCGTGATCCAGGGTTACTCTTTGGCGAAGGGCATGGGAATCGGAAAACACATCGCGAGCGACGTTTTCTGCGTCGGAGGTTACCAGTGGGCGATCTATTTCTACCCCGACGGGAAGAATCCGGAGGATAACTCAGCTTACGTTTCGATGTTCATCGCTCTCGCTAGCGAAGGAGCCGATGTGAGGGCGCTTTTCGAGCTCACACTTGTTGATCAGAGTGGACAGGGAAAGCATAAGGTCCATAGCCACTTCGATCGCTCGCTTGAGAGTGGACCTTACACCCTCAAGTATAAGGGAAGCATGTGGGGGTACAAGCGGTTTTACAGACGGACTCTGCTTGAAACCTCTGATTTCCTTAAGAACGATTGCTTGAAAATCAACTGTACAGTTGGAGTTGTGGTTTCAGCTACCGATTGTCCGCAACTTCACACTATCCATGTACCAGAGTCAGACATCGGATCTCATTTTGGTATGCTATTGGAAAATATGGAAGGCTCAGATGTTACTTTTGATGTAGCCGGGGAGAAATTCCCTGCTCATAAGTTAGTATTGTCTGCCAGATCCCCACAATTCCGGTCGAAATTTTTCGAAGGCTTAGATCCGGAAAAAAAAGAGGTCACAATAACAGATTTAGAACCTAAGGTTTTTAAGGCCATGCTGCACTTTATATATAGGGATACCCTTACAGAAGAGGTGGACAAGGTTCCATCTACCACATCTAGTGATTTTCCAGTTTTGGATACATTGACAGGGAAGTTGTTAGCTGCAGCAGACAAGTATGGGTTGGAGAGGCTTAAACTGATGTGTGAATCGTGTCTTTGCAAGGACATTTGTGTGAATTCCGTGGCCAATATTTTGATTTTGGCTGACAATTGCCATGCTGCAGAGTTAAAATCTGTTTGCCTGAAATTTGCTGCTCAAAATCTAGCAGCTGTTATGAGGTCAGATGGATTTGAGCATATGAAAGAAAAATGCCCATGGCTACAGTCTGAGATCCTGAAGACGATTGCTGGCTGTGAGAGTGACAATTGCAGCGCAGGGGAAAAATCTCAGAGCGTTTGTGCGCAGCTATCAGATGGTGGTGACACAAATGGTAGGAGGGTTGAGGGTTCGATGACGGTTTCCACGACGAGGAAGACGAGGGATCCTTACATTATTATCAAAGCTAGGGATCTTATTAAGCTTCTTTCACGAAGTGTTCCTGTTCCTCAGGCGATCAAAATACTCGATGATGAAGTGCAATGCGACATCATTAAAATTAGTGGCCTCGTCCGCAATAAGGAGCGTTTTGTAAAAAGAAGACAACATCTTGTGGGTCCCAATTCCTCCACATTGAAGGCTCTTGAAATACTCACTGGTTGCTACATTCTCGTCCAGGGAAACACGGTTGCTGCAATGGGTTCATTTAAAGGCTTGAAGCAAGTAAGAAGAATTGTTGAAGAATGCATGACGAATAAAATGCATCCTGTATACAACATTAAGATTCTTATGCTGAAGAAGGAACTTGAAAAGGATCCAGCCCTTGCAGAAGAAAACTGGGATAGGTTTCTTCCAAAGTTCAAGAAGAAAAATGTTCAGCAAAAGAAGGTTAAATCTAAAGAAAAGAAGCCATATACTCCTTTCCCTCCTCCTCAACAGCCCAGTAAGGTTGATATTGAATTAGAAACTGGAGAATACTTCTTAAGTGCTAAGAAGAAATCGGCAAAGAAATGGCAAGAGAAGCAGGAGAAGCAAGCGGAAAAAACTGCTGAAAACAAAAGAAAAAGAGAAGAGGCCTTCATTCCACCACAGGAACCTACAAAGCTGGTGGATAAATCTGAAGATGCTAATAATAATAGTGTCACTGATATCGCCAAGTCCTTAAAGGAAAAAGCAAAGAAGCTAGGGAAGCGCAGATCTGAAGAAAACACAAATGCTGAGACATACATCATAGGATCATCAGAACAGCCATCGGGAAAGAAATCAAAGAAGCAAAGATCTTAA 2088 0.4444 MAGTSTTPEKSATAMALMSPTCSRSVTQTVNGSHKFVIQGYSLAKGMGIGKHIASDVFCVGGYQWAIYFYPDGKNPEDNSAYVSMFIALASEGADVRALFELTLVDQSGQGKHKVHSHFDRSLESGPYTLKYKGSMWGYKRFYRRTLLETSDFLKNDCLKINCTVGVVVSATDCPQLHTIHVPESDIGSHFGMLLENMEGSDVTFDVAGEKFPAHKLVLSARSPQFRSKFFEGLDPEKKEVTITDLEPKVFKAMLHFIYRDTLTEEVDKVPSTTSSDFPVLDTLTGKLLAAADKYGLERLKLMCESCLCKDICVNSVANILILADNCHAAELKSVCLKFAAQNLAAVMRSDGFEHMKEKCPWLQSEILKTIAGCESDNCSAGEKSQSVCAQLSDGGDTNGRRVEGSMTVSTTRKTRDPYIIIKARDLIKLLSRSVPVPQAIKILDDEVQCDIIKISGLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMTNKMHPVYNIKILMLKKELEKDPALAEENWDRFLPKFKKKNVQQKKVKSKEKKPYTPFPPPQQPSKVDIELETGEYFLSAKKKSAKKWQEKQEKQAEKTAENKRKREEAFIPPQEPTKLVDKSEDANNNSVTDIAKSLKEKAKKLGKRRSEENTNAETYIIGSSEQPSGKKSKKQRS 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60527g00012 695 Gene3D Potassium Channel Kv1.1; Chain A 169 340 IPR011333 -
Stsc60527g00012 695 MobiDBLite consensus disorder prediction 603 695 - -
Stsc60527g00012 695 ProSiteProfiles BTB domain profile. 201 267 IPR000210 GO:0005515
Stsc60527g00012 695 MobiDBLite consensus disorder prediction 654 672 - -
Stsc60527g00012 695 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 447 552 IPR036612 GO:0003723
Stsc60527g00012 695 Pfam Krr1 KH1 domain 403 446 IPR041174 -
Stsc60527g00012 695 MobiDBLite consensus disorder prediction 559 585 - -
Stsc60527g00012 695 CDD KH-I_KRR1_rpt2 448 541 - -
Stsc60527g00012 695 CDD BACK_AtBPM-like 309 370 IPR034090 -
Stsc60527g00012 695 Gene3D K Homology domain, type 1 447 550 IPR036612 GO:0003723
Stsc60527g00012 695 ProSiteProfiles MATH/TRAF domain profile. 31 165 IPR002083 GO:0005515
Stsc60527g00012 695 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 30 168 IPR008974 GO:0005515
Stsc60527g00012 695 SUPERFAMILY TRAF domain-like 28 167 - -
Stsc60527g00012 695 SMART math_3 36 148 IPR002083 GO:0005515
Stsc60527g00012 695 FunFam KRR1 small subunit processome component 447 550 - -
Stsc60527g00012 695 PANTHER HIV-1 REV BINDING PROTEIN 2, 3 403 672 IPR024166 -
Stsc60527g00012 695 Pfam BTB/POZ domain 194 310 IPR000210 GO:0005515
Stsc60527g00012 695 SUPERFAMILY POZ domain 178 312 IPR011333 -
Stsc60527g00012 695 Coils Coil 653 673 - -
Stsc60527g00012 695 CDD BTB_POZ_BPM_plant 187 309 - -
Stsc60527g00012 695 FunFam BTB/POZ and MATH domain-containing protein 4 30 169 - -
Stsc60527g00012 695 Gene3D K Homology domain, type 1 341 446 IPR036612 GO:0003723
Stsc60527g00012 695 FunFam BTB-POZ and math domain 1 177 306 - -
Stsc60527g00012 695 SMART BTB_4 201 312 IPR000210 GO:0005515
Stsc60527g00012 695 MobiDBLite consensus disorder prediction 603 640 - -
Stsc60527g00012 695 CDD MATH 32 165 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60527g00012 Stsc-Chr60527 46251 53948 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc60527g00012 BTB 6.5e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60527g00012 K10523 - gmx:100806769 685.256