Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60526g00009 ATGCTTCATTCTGAAGACTATGAAACCATTGAAGCTTCTCTCTGTGCTCTGCTCAGTCTTGCCTTCGGCAGCGAAAGAAACAAGACAAGGATCATCAAGTGTGGAGCTTTACCAGTTCTGCTAAATCACCTTCACTCTCAAAGCCAGACAGTGGTGCAGTTGACAATAGCAGCCATGCTAACCCTCTCATCCTGCAAGGCAAATAAGGTCGCAATTGCTTCATCCGGTGCTGTACAACACTTGGCTGAATTTGTAAATAGCGGTGATATTCAGTTACAGCTGGATGTTGTGGCCACAATCCACAACCTCTCAACCTGCAAAGAGATTGTTCCATTGATCGTTGCTTCTGGCATTGTACTTTCCTTGCTCGAACTGGTCCATAGCTCTGTAAAACCATCTCCATTGGGTGAAAAGGCGATTGGTTTGCTCGAAAATATTGTCTCTTCGTCAGAGAGTGCACTTTGTGAGGCTGCTAGTGTTGGTGGGGCAATTCGGATACTGGTTGAGACTATTGAAGATGGATCTTGTCTAGCGAAAGAGCATGCAGTTGGTATACTTCTCCTTATATGCCAAAGTTGCAGAGAGAAATACAGAGGAATGATTCTGAGAGAGGGAGTGATGCCAGGACTGCTTCAGTTAAGCATAGATGGAACACGGAGAGGCAAGAACATGGCTCGGGAATTGTTGTTGCTTCTGAGGGATTGCTCAGATTATAGTTCAAGACGAAGACAAATGAATCATGAGCTCATAGAACAAATCATGGAAGAAATTGATGCAGATGGAGAGAATTTGGCTGATGCTAAGCTGAGGTTAGTGGAGGAGATGATTGCAAAGCTGAACACATAA 846 0.4444 MLHSEDYETIEASLCALLSLAFGSERNKTRIIKCGALPVLLNHLHSQSQTVVQLTIAAMLTLSSCKANKVAIASSGAVQHLAEFVNSGDIQLQLDVVATIHNLSTCKEIVPLIVASGIVLSLLELVHSSVKPSPLGEKAIGLLENIVSSSESALCEAASVGGAIRILVETIEDGSCLAKEHAVGILLLICQSCREKYRGMILREGVMPGLLQLSIDGTRRGKNMARELLLLLRDCSDYSSRRRQMNHELIEQIMEEIDADGENLADAKLRLVEEMIAKLNT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60526g00009 281 Coils Coil 250 270 - -
Stsc60526g00009 281 Pfam Armadillo/beta-catenin-like repeat 67 104 IPR000225 GO:0005515
Stsc60526g00009 281 FunFam U-box domain-containing protein 4 154 270 - -
Stsc60526g00009 281 Gene3D - 1 156 IPR011989 -
Stsc60526g00009 281 SUPERFAMILY ARM repeat 2 263 IPR016024 -
Stsc60526g00009 281 PANTHER U BOX DOMAIN-CONTAINING 2 235 - -
Stsc60526g00009 281 Gene3D - 157 260 IPR011989 -
Stsc60526g00009 281 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 35 77 IPR000225 GO:0005515
Stsc60526g00009 281 SMART arm_5 65 105 IPR000225 GO:0005515
Stsc60526g00009 281 SMART arm_5 24 64 IPR000225 GO:0005515
Stsc60526g00009 281 SMART arm_5 106 148 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60526g00009 Stsc-Chr60526 105343 106762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60526g00009 1 234 U-box Gene Family AT2G23140 31.624 1.27e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60526g00009 - - gmx:100778534 410.609