Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60526g00007 ATGGACCAAGATTCCATCTTTCTTCCTGGCTCAACTCCAATTTGCAGCAAGATATTTGTAAGCCTTATACCACCAACCATAACAAATGATCAATTAAGAGAGCACTTTGCTCAATATGGCACCATCAGGCATTCTATCTTCATTACAGATCCCAACACCAACAACACCAGCGAGCCTCGCGGATTCGGGTTCGTGAATTTCACTGATCTCTCTGCTGTTGATAGAGTCATTGATGACAATAACCATTTCATCAATGGAATTCAGGTTGGGGTTGACAAATGCACATTACAAGGAAGAAAAAGAGAAGGCTTTAAGACTAACATACTTTATGTCTATGGAATTCGTCCAACACTTTCTTCAGATGCATTGGCAAATTTCTTTGGTCAACATGGACGAGTCATTTCTTGTAGTATAGATAGGGCAAAATGCCAAGGATCTGTTTACTTCGATTCTAGCAAAAGTGTTGAAGATATTCTAGCATCTTTTGGGAGTTGGGTTGATTTACAGCGAGGAGTTAGGCTGGAAATAAGCAAGTATGTCCTAAGAAGGCAACCAATTGCTCCATCTTCTCCTTCTCCACCTCATTTAAGACACTCAAACATTGCTGAATCATCCGGAAGACGAGGCGATTTTGGAGTGCATGGTCCTCTTCAACCGGCGGTTTATAACCCGGCCGGAGGAACCACGACGGTTTATAACGTGTTCTGGCAGCCTTATGTAAGCTATGGAAATATAAGTGGTGCTAATGCTATGGTACCATGTTACTATGCTCCTCCCATCATGCATAATCCTCAATATGGAACACCTTTCCATTATGGAAATGGTGGTGCAATGGCTGGTTATGCTGGCCATTACGGCGGCCAAAATGTCCTCGGCTCGGGCTCGGCCGGTGTCTCTCAAGAGGCCAGTGGTAGTAGTGGAGGTACCTTGAATGCTACTAGCCAAGATACATATAATAAGGTTTTGTTCTTTATTTATGACATTTGTGTTTGTTCTTTTGAAAGGAATGGTTCATCTGCATTGCTTGTTACTGCTCATATGAATCCAAACCAACCTTCGTTCTTCAATACGATAGCGGAGCGCAGCATTGTTGGAAGTCCCGTTGGTGGTGACAGTAGAGTCTGTCGTGGCGACAACAGCATTAACGAGCGTGTAGAGAATGCCTTCTGCTATAGCGACAACTTCATCGAAGTGGAAATAGGAGATAGGAGAGTGGAGTTCCGATGA 1227 0.4344 MDQDSIFLPGSTPICSKIFVSLIPPTITNDQLREHFAQYGTIRHSIFITDPNTNNTSEPRGFGFVNFTDLSAVDRVIDDNNHFINGIQVGVDKCTLQGRKREGFKTNILYVYGIRPTLSSDALANFFGQHGRVISCSIDRAKCQGSVYFDSSKSVEDILASFGSWVDLQRGVRLEISKYVLRRQPIAPSSPSPPHLRHSNIAESSGRRGDFGVHGPLQPAVYNPAGGTTTVYNVFWQPYVSYGNISGANAMVPCYYAPPIMHNPQYGTPFHYGNGGAMAGYAGHYGGQNVLGSGSAGVSQEASGSSGGTLNATSQDTYNKVLFFIYDICVCSFERNGSSALLVTAHMNPNQPSFFNTIAERSIVGSPVGGDSRVCRGDNSINERVENAFCYSDNFIEVEIGDRRVEFR 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60526g00007 408 Gene3D - 14 93 IPR012677 -
Stsc60526g00007 408 Gene3D - 94 178 IPR012677 -
Stsc60526g00007 408 MobiDBLite consensus disorder prediction 186 205 - -
Stsc60526g00007 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 83 IPR000504 GO:0003723
Stsc60526g00007 408 SMART rrm1_1 108 175 IPR000504 GO:0003723
Stsc60526g00007 408 SMART rrm1_1 17 92 IPR000504 GO:0003723
Stsc60526g00007 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 179 IPR000504 GO:0003723
Stsc60526g00007 408 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 15 315 - -
Stsc60526g00007 408 SUPERFAMILY RNA-binding domain, RBD 16 168 IPR035979 GO:0003676
Stsc60526g00007 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60526g00007 Stsc-Chr60526 76369 78949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60526g00007 10 138 Eukaryotic Initiation Factors Gene Family AT1G71770 25.503 3.27e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60526g00007 K12741 - ahf:112801934 172.17