Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60526g00006 ATGTTGTTGAGTTCAATTCTAATTTATTTAAACTCTACAATTTGCAGCAAGTTATTTGTACGGCTTATACCACCAACCATAACAATTGATCAATTAAGAGAGTACTTTGCTCAATATGGCACCATTAGGGATTCTATCTTCATTCTAGATCCCAACACCAGCCAGCCTCGCGGATTCGGCTTTGTCAATTTCGTTAATCCCTCTTCACTTGATCGAGTCATTGAGGACAACAGTCACTGTATCAATGATCATTGGATTGGGGTTGATAGATGCACATTAGATGGGAAAAGGGAAGGCTTTAAGAGTAACAGACTTTATGTCTATGGAATTCCTCCACCACTCTCTTCATCAGATGCATTGGCAAAGTTCTTTGGTGGTTATGGACAAGTCATTGCTTGTAGTACAGATAGGGGAAAATGCCAAGGATCTATTTACTTTGAATCTAGCAAAAGTGTTGATGATGTTATAGCAGCAAATCAAAGTTGGATTTCTTTAAATGGAGGAGTTATGATGGAATTAAGCAAGTATGTTCTAAGAAGGCACCCAATTCTTCTACCTCGCTTAAGACACTTATACAAGGCGGTTGCATCCGGAAGAGGTGGCGATATTGCAGCGCAGAATCCTCCTCAAACGGCAGTTTATAACCCGGCCGGACAAAACATGACGCCGAGTGGTGGTGTGGTGGTTAATAACCAGTTGTGGCAGCCTTATGGAAGCTATGGAAATATAAGTGGTGGTGGAGGTGCTAATGCTATGGTATCCATTCTACAATTTCCTAGCTCCACTGGATATGAATATTCATATTACTATGCTCCTCCTCCCACCATGTATAATCCTCAATATCAATATGGAATACCTTCCCATTATGGATATGGTGGTGCTCAAGTTGGCCGTTACGGCGGCCAAAATGTTGTTAGCCGCGCCGGTGTATTCACTCAACGGGCTAGTGGTTATGCTGGCCATTACGGCGGCCAAAATGTCCTTGGCTCGGCCGGCGTCTATCAAGAGGCTAGTGGTAGTGCAACGGGTTATGCTGGCCATTATGGAGGCCAAAATGTCGTCGGCTCGGCCGGTGTCTCTCAAGAGGCTAGTGGTAGTGGTAGTGGTGGAGGTCCCTTGAATGCTACTACTAGGCAAGCTGATAATTCAAGTTCTCTATTTTCATATCCAATGGTGACACAAGGGGCTAGTGGGAGTGGAGGTTCCTCTAATGCAAAGCAAGATGACAATTCAAATTCTCTGTTTTCATATGAAATGGTCACAAAAGGGGATAGTGGGAGTGGAGGTGCTTCCAATGCAAGGCAAGATGATGATCCAGATTCTCTGTTTCCATATCCAATGTTCACAGAAAAAGGACTTTAA 1362 0.4354 MLLSSILIYLNSTICSKLFVRLIPPTITIDQLREYFAQYGTIRDSIFILDPNTSQPRGFGFVNFVNPSSLDRVIEDNSHCINDHWIGVDRCTLDGKREGFKSNRLYVYGIPPPLSSSDALAKFFGGYGQVIACSTDRGKCQGSIYFESSKSVDDVIAANQSWISLNGGVMMELSKYVLRRHPILLPRLRHLYKAVASGRGGDIAAQNPPQTAVYNPAGQNMTPSGGVVVNNQLWQPYGSYGNISGGGGANAMVSILQFPSSTGYEYSYYYAPPPTMYNPQYQYGIPSHYGYGGAQVGRYGGQNVVSRAGVFTQRASGYAGHYGGQNVLGSAGVYQEASGSATGYAGHYGGQNVVGSAGVSQEASGSGSGGGPLNATTRQADNSSSLFSYPMVTQGASGSGGSSNAKQDDNSNSLFSYEMVTKGDSGSGGASNARQDDDPDSLFPYPMFTEKGL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60526g00006 453 Gene3D - 92 175 IPR012677 -
Stsc60526g00006 453 MobiDBLite consensus disorder prediction 358 434 - -
Stsc60526g00006 453 CDD RRM_SF 105 160 - -
Stsc60526g00006 453 SMART rrm1_1 104 172 IPR000504 GO:0003723
Stsc60526g00006 453 SMART rrm1_1 17 89 IPR000504 GO:0003723
Stsc60526g00006 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 107 IPR000504 GO:0003723
Stsc60526g00006 453 Gene3D - 13 91 IPR012677 -
Stsc60526g00006 453 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 15 371 - -
Stsc60526g00006 453 SUPERFAMILY RNA-binding domain, RBD 16 162 IPR035979 GO:0003676
Stsc60526g00006 453 MobiDBLite consensus disorder prediction 358 453 - -
Stsc60526g00006 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60526g00006 Stsc-Chr60526 72979 74687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60526g00006 11 143 Eukaryotic Initiation Factors Gene Family AT4G34110 28.105 1.23e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60526g00006 K12741 K14411 ahf:112801934 141.739