Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60526g00005 ATGGAAGAAGAAGGTCCCAACTTTGTTCCTGGGTTATATGTAGACTTTGTACCACCAACCATGGAAACTGATCAATTAAAGGAGCACTTTGCTCAATATGGCGAGATTACGGATTCTGTCATCATCAATCATGACGACACGGGCACGCGTAACGGCTACGCCTTTGTAACTTTCAAAGATCCCTCTTCAGTTGATAAAGCTATTAAGGACAATGATCATCTTATCAATCACCATCTGCTTAGGGTTGCCAAAACCAGATCAAAGGTGAGGTCGAGAGATCAAGATGACTATAAGACAAACAGACTTTATTTTTATCTACTTCCTAAGAATGTGTCTTCAGATGCAGTGTCAACGTTCTTTGGTGAATATGGAAAAGTCATTTCTTGTAGAATACAAAGGGGTACACACTATGGATATGTTTACTTCCAGTCTGATCAAACCGCTGATGATATTCTAGCAGCTTATGGAAATTGGATCAATTTTCGTGGAAGATTTATGCTGGAAATAAGCAAGCATAAACTCCAAAAATACTTAGACAATGCTAACAGAGAAGGTGGCCATTCTGCTGCGCAGATTCCTCATCGAACCGCTGCTCATAGCCCGGCCGGAGAAAATACCTCGAGTGGCCGGCGAGATGGTAACAATAGGGCGGTTCAAAACCAGTTGTGGCAGCCTTATGGCAGCCATGGAAATGTATATGGTGGTGGTGGAGGTGCTATGGTACCCTCTGTAGCACTTCCTAACTCTATTGGATATGGATGTTACTATCCTCCCACCATGTCTGTTCCTCAATATGGAATACCTTCCCATTATGGATATGGTGGTGCATCAATGGGATATGGTAATGCAACAGGTTATGCTGGCCGTTACGGCGGCCAAAATGTCGTCGGCCGAGCCGGTGTATCCACTCAAGGGGCTAGTGGTAGTGGAACAGGTTATACTGGCCATTACGGCGGCCAAAATGTCGTCAGCTCGGCCGGTGTATATCAAGAGGCTAGAGGTAGTAGAGGTCCCTTGAATGCTAGTAGCCAAGTTGATGATTCAAATTCTCTATTTTCATATCCAATGGTGACACAAGGGGCTAGTGGTAGTGGAGGTTCCTCTAATGCAAACCAAGATGATAATTCAAATTCTCTGTTTTCATATGAAATGGTCACACAAGGGGCTAGTGGGAGTGGAGGTGTCTCCAATGCAAGCCAAGATGATAATCCAGAATCTCTGTTTTCATTTTTCATATCCAATTGTCAGAAAAGACTTTAA 1260 0.4357 MEEEGPNFVPGLYVDFVPPTMETDQLKEHFAQYGEITDSVIINHDDTGTRNGYAFVTFKDPSSVDKAIKDNDHLINHHLLRVAKTRSKVRSRDQDDYKTNRLYFYLLPKNVSSDAVSTFFGEYGKVISCRIQRGTHYGYVYFQSDQTADDILAAYGNWINFRGRFMLEISKHKLQKYLDNANREGGHSAAQIPHRTAAHSPAGENTSSGRRDGNNRAVQNQLWQPYGSHGNVYGGGGGAMVPSVALPNSIGYGCYYPPTMSVPQYGIPSHYGYGGASMGYGNATGYAGRYGGQNVVGRAGVSTQGASGSGTGYTGHYGGQNVVSSAGVYQEARGSRGPLNASSQVDDSNSLFSYPMVTQGASGSGGSSNANQDDNSNSLFSYEMVTQGASGSGGVSNASQDDNPESLFSFFISNCQKRL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60526g00005 419 CDD RRM_SF 102 166 - -
Stsc60526g00005 419 MobiDBLite consensus disorder prediction 184 214 - -
Stsc60526g00005 419 Gene3D - 86 176 IPR012677 -
Stsc60526g00005 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 174 IPR000504 GO:0003723
Stsc60526g00005 419 MobiDBLite consensus disorder prediction 353 377 - -
Stsc60526g00005 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 87 IPR000504 GO:0003723
Stsc60526g00005 419 SUPERFAMILY RNA-binding domain, RBD 12 162 IPR035979 GO:0003676
Stsc60526g00005 419 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 12 347 - -
Stsc60526g00005 419 SMART rrm1_1 101 170 IPR000504 GO:0003723
Stsc60526g00005 419 SMART rrm1_1 11 83 IPR000504 GO:0003723
Stsc60526g00005 419 MobiDBLite consensus disorder prediction 200 214 - -
Stsc60526g00005 419 Gene3D - 11 85 IPR012677 -
Stsc60526g00005 419 CDD RRM_SF 12 82 - -
Stsc60526g00005 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 70 IPR000504 GO:0003723
Stsc60526g00005 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 164 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60526g00005 Stsc-Chr60526 69443 71379 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60526g00005 6 203 Eukaryotic Initiation Factors Gene Family AT1G71770 21.973 2.90e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60526g00005 K12741 - ahf:112801934 176.792