Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60526g00004 ATGAATGATCGCTTCAACCCCCAGCGTCGCGGGTTCGGCTTTGTAAATTTTGCAGATCCCTCAGCAGCTGATAAAGCCATTAAGGACAAAAATCATTTTATCAACGGTCATAAGGTTCTGGTTGACAAATGGATAGCAAAGTTGAGGTCGAAAGATGGTTGGCACGTTATGACAAAAACACTTTATGTTTATCAAATTCCTCAACATGTGTCTTCAGATGAATTGGCAACGTTCTTTGGTGAATATGGAGAAGTCAATTCTTGTAGAATACAAAGGGATGAACACTATGGATCTATTGACTTCGAGTCTGATAAAACCGTTGATGATATTCTAGCAGCTAATGGGAATTGGATCAATTTTCGTGGAAGATTTATGCTGGAAATAAGCAAGCATATCATCCGAAGACACCTAAACAATGATAACAGATCCAGAGAAGGTGGCGATCTTCGTGCGCGCAATCCTCATCAAACAGCTGCTTATAGCCCGGCCAGATATGGTAGTGCTGCTCATCGTGGCCGTTACGGCGGCCAAAAATGTCATCGGCCGAGCTGGTGTATCCATTGGGGCTAG 570 0.4316 MNDRFNPQRRGFGFVNFADPSAADKAIKDKNHFINGHKVLVDKWIAKLRSKDGWHVMTKTLYVYQIPQHVSSDELATFFGEYGEVNSCRIQRDEHYGSIDFESDKTVDDILAANGNWINFRGRFMLEISKHIIRRHLNNDNRSREGGDLRARNPHQTAAYSPARYGSAAHRGRYGGQKCHRPSWCIHWG 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60526g00004 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 38 IPR000504 GO:0003723
Stsc60526g00004 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 118 IPR000504 GO:0003723
Stsc60526g00004 189 CDD RRM_SF 61 121 - -
Stsc60526g00004 189 SUPERFAMILY RNA-binding domain, RBD 54 119 IPR035979 GO:0003676
Stsc60526g00004 189 Gene3D - 57 125 IPR012677 -
Stsc60526g00004 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 125 IPR000504 GO:0003723
Stsc60526g00004 189 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 170 - -
Stsc60526g00004 189 SMART rrm1_1 60 129 IPR000504 GO:0003723
Stsc60526g00004 189 SUPERFAMILY RNA-binding domain, RBD 2 47 IPR035979 GO:0003676
Stsc60526g00004 189 Gene3D - 1 43 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60526g00004 Stsc-Chr60526 63264 64270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60526g00004 8 115 Eukaryotic Initiation Factors Gene Family AT1G49760 34.483 5.16e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60526g00004 K12741 - ahf:112801934 102.834