Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60526g00001 ATGGACGTTACGAAGCGCAGCTCCGTCTTCACCCAGATCGCTTCAAGGGAGCTCAATTCCTTCAGAGTTCGCAAACGGCCTTACATGGATGGATTCGTCACTGGATTCGTGGAACACGGAGCTGTTGGTGTTCACCACAGCGAAGAAAGCACCATTCCCATGTCCCTCTCCTTCTGTAAGACTTCCAAGTTTTCACACATTCTGGCTTTATCTGATGAGGATGGATACCTAACCTTGTTCGATTCGCGTAAAAAATTCTCCGTATTGTCCTCGTTTGAAGAAAATGCAGATAAAGCGAAGATATGTGAGTGGGTTTCGCATCTCAATGCCGTGTTTGATATTTGTTGGATTAAGTCTCTCATAAGAGTTATGCTTTACAATTCTTTTCAGGAAGACACACAGATACTCACAGCTTCTGGTGATCAAACGATGAAGGTATGGGATGTCCAAGAAAAGAAATGTATTGGAGTGTTGAAGGGGCACACAGGGAGTGTGAAGTCTATGTGTTCTCATCCAAATAATGCTGATATTATTGTCTCTGGTTCAAGAGATGGATCCTTTTGTCTCTGGGACTTAAGATGCAAATCGGCAACTAGGGGTAAACATGGAGAAGTTAGCATATGTTCAACGGCTGTTGTCAAAGGAGCACATCTTTCATCTCAAGCAAAACGAGTCAGAAAGGGGAAGGCTAAGTCCATGAGCATTACATCTGTTCTTTGTCTCAAGGACCAGGTTTCCATAGCCACCGCCGGGGCAGTGGATAGTGTGTTGAAGTTTTGGGATACCAGAAATTTGAAGAGTTTCGTTACACAGGCATCTCCTCGTCCTCAGTCAACAGAAAAGGGAAGATTACATGGCATATCTAGCTTATCCCAAGATGACAGCGGTCTTTTCCTTTCAGCATCATGCATGGATAACTGCATTTATCTCTATAACATCCTTCAACTTGACAAGGGGCCTTTCAGATCTTTTCCTGGATGTCCCATAGAATCATTTTTTGTCAAGGCTGCGATTAGCCCAGATGCGTCTCAAATAGTCAGCGGTTCTAGTAATGGAAATGCCTATGTCTGGCAGGTTAACAAGCCTCAAGCGATGCCTGTTATTTTGAAAAGTCATGATGGGGAGGTTACAGCAGTTGACTGGAACCGCTCTGAGATTGGTAAATTAGCTACTGCTTCAGATGATTGCACAGTTCGGACTTGGAATCAAACCAATTATGTCTCTGACAAAAAGACTTCATGTTCCATCCGAAGAAGAGTAATGGCAATGCCTTGTACAGAAAGCAAAATGCTATTGAACAATGAAGAAAAGTATCTCAACTCAATAGATAATGAATCATTAGATCCCTCAGTTAAGTTAGCTACTCCCATTACACCACCTAAAGTTCTTACAACTGAAGGTCACAAGAATCAGCTTCCCTCGGTATTCAATCAAACTGCATTATCTGAAAAGACTCCAGAATCTGCTTTAAAGAGCCCCTCGTCTGTTTTGAACCCTCCATCTTCCTTGAAAAGAACTATCCGGGACTACTTTTTGGCATCATCATGA 1548 0.4276 MDVTKRSSVFTQIASRELNSFRVRKRPYMDGFVTGFVEHGAVGVHHSEESTIPMSLSFCKTSKFSHILALSDEDGYLTLFDSRKKFSVLSSFEENADKAKICEWVSHLNAVFDICWIKSLIRVMLYNSFQEDTQILTASGDQTMKVWDVQEKKCIGVLKGHTGSVKSMCSHPNNADIIVSGSRDGSFCLWDLRCKSATRGKHGEVSICSTAVVKGAHLSSQAKRVRKGKAKSMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKSFVTQASPRPQSTEKGRLHGISSLSQDDSGLFLSASCMDNCIYLYNILQLDKGPFRSFPGCPIESFFVKAAISPDASQIVSGSSNGNAYVWQVNKPQAMPVILKSHDGEVTAVDWNRSEIGKLATASDDCTVRTWNQTNYVSDKKTSCSIRRRVMAMPCTESKMLLNNEEKYLNSIDNESLDPSVKLATPITPPKVLTTEGHKNQLPSVFNQTALSEKTPESALKSPSSVLNPPSSLKRTIRDYFLASS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60526g00001 515 Gene3D - 199 446 IPR015943 GO:0005515
Stsc60526g00001 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 369 402 - -
Stsc60526g00001 515 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Stsc60526g00001 515 PRINTS G protein beta WD-40 repeat signature 178 192 IPR020472 -
Stsc60526g00001 515 PRINTS G protein beta WD-40 repeat signature 389 403 IPR020472 -
Stsc60526g00001 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 135 157 IPR001680 GO:0005515
Stsc60526g00001 515 Pfam WD domain, G-beta repeat 106 148 IPR001680 GO:0005515
Stsc60526g00001 515 Pfam WD domain, G-beta repeat 368 402 IPR001680 GO:0005515
Stsc60526g00001 515 Pfam WD domain, G-beta repeat 153 191 IPR001680 GO:0005515
Stsc60526g00001 515 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 5 513 - -
Stsc60526g00001 515 SUPERFAMILY WD40 repeat-like 58 405 IPR036322 GO:0005515
Stsc60526g00001 515 MobiDBLite consensus disorder prediction 481 501 - -
Stsc60526g00001 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 402 IPR001680 GO:0005515
Stsc60526g00001 515 SMART WD40_4 221 261 IPR001680 GO:0005515
Stsc60526g00001 515 SMART WD40_4 151 191 IPR001680 GO:0005515
Stsc60526g00001 515 SMART WD40_4 97 148 IPR001680 GO:0005515
Stsc60526g00001 515 SMART WD40_4 273 312 IPR001680 GO:0005515
Stsc60526g00001 515 SMART WD40_4 362 402 IPR001680 GO:0005515
Stsc60526g00001 515 SMART WD40_4 317 358 IPR001680 GO:0005515
Stsc60526g00001 515 Gene3D - 42 198 IPR015943 GO:0005515
Stsc60526g00001 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 158 193 IPR001680 GO:0005515
Stsc60526g00001 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 158 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60526g00001 Stsc-Chr60526 15086 18694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60526g00001 129 357 U-box Gene Family AT1G04510 25.794 1.28e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60526g00001 K11790 - gmx:100775857 704.901