Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60525g00010 ATGGGCATCGGAATTTCAGTTCTCATAGCACTCAAAGCCACCACGCTTTTATTATGCTTCGTCTACCTCAAGAACCATGGCTACACCCTCATCTCCGCCCCATTCCTCTACTCATCACTCGTTTCCTTCTTGGTTTCGATCGCATCTCACCCCTCCATTGACCTCCCCATGCTTTTGGGCAAGAACACCGACGGAACCTTCCCAATCTGGTCCCTCTTAATCTTCAGCCCTTACTTGTACTTCGTCCGATTCTTCTCTGCGCTTAGAAGGCTCCGAAGCGGTGAACCACCTTTCACTGAAGTCCACCATGGACTCTTCGTCGGAGGCTGGCCATCGTCGCGCCAGAAGCTGCCACCTGGCGATCCTGCCATCGTTGATTGCACCTGCGAGTTCCCGAGGTTGGAGGAGTTCTCTAAGCTTCCTTATATGTGCGTTCCTACATGGGACACGAGATCGCCGAAGCCCTCTGATATTGAATCTGCTGTTAAGTGGGCTTCTAGAAAGAGGGACCTCAATAAACCCATTTTTGTTCACTGTGCTTATGGTCATGGAAGAAGTGTTGCTGTTATGTGTGCATTGCTAGTGGCACTGGGTATTGCAGAGGATTGGAAAAATGCTGAGAAGCTGATCAAACAAAAACGGCCTTACATCCGGATGAATGCCCTTCATCGCAAGGCTCTCGAAGAATGGTCCAAGCACAGGTTGTCCACGCCAAAGAGGCAATGA 726 0.5028 MGIGISVLIALKATTLLLCFVYLKNHGYTLISAPFLYSSLVSFLVSIASHPSIDLPMLLGKNTDGTFPIWSLLIFSPYLYFVRFFSALRRLRSGEPPFTEVHHGLFVGGWPSSRQKLPPGDPAIVDCTCEFPRLEEFSKLPYMCVPTWDTRSPKPSDIESAVKWASRKRDLNKPIFVHCAYGHGRSVAVMCALLVALGIAEDWKNAEKLIKQKRPYIRMNALHRKALEEWSKHRLSTPKRQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60525g00010 241 CDD DSP_bac 94 232 - -
Stsc60525g00010 241 PANTHER - 3 240 - -
Stsc60525g00010 241 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 82 235 IPR029021 -
Stsc60525g00010 241 Gene3D Protein tyrosine phosphatase superfamily 98 236 IPR029021 -
Stsc60525g00010 241 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 156 225 IPR000387 GO:0016311|GO:0016791
Stsc60525g00010 241 SMART dsp_5 97 233 IPR020422 GO:0006470|GO:0008138
Stsc60525g00010 241 Pfam Dual specificity phosphatase, catalytic domain 124 232 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60525g00010 Stsc-Chr60525 48955 51556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60525g00010 133 238 Protein tyrosine phosphatase (PTP) family AT5G56610 28.182 2.36e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60525g00010 - - aprc:113873203 420.239