Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60525g00006 ATGGGATCGGAGTGTGTGGTTCCGGAATGGGCATCTCAGCCTTGCATTATGGGAATCGACGAAGCCGGTAGAGGCCCCGTTTTGGGTCCAATGGTCTATGGTTGCTTATACTGCTCTCGCTCCTACAAGAACACTCTCTCCACTCTCAGTTTTGCTGATTCCAAAACCCTCAAAGAAGACAAGAGGGAAGAACTCTTTGAAGCTCTCAAATCCAATCACTCTCTTGGTTGGGCCGTTGACGTCATCGACCCCAGGGACCTCTCCGCTAAGATGCTCCAGAAGAACAAGATTAACTTGAACGAGATTTCACATGATTCTGCTATGGGCCTCATCCATAGGGTGCTCAAATTGGGAGTGCTCTTAACCGAGGTTTATATAGATACAGTTGGAGATGCAGGGAAATACGAAGTGAAGCTGTCTAAAGTTTTTCCATCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTTAGTGGTGCAAGCATTGTTGCGAAGGTCACTAGGGACCGGGCTTTAAGAGACTGGGTTCTTGATGAGAGTGCCGAAAACATGCACAGGAACTTTGGCTCTGGATATCCCGGAGATCCCCAAACCAAGTCTTGGCTAGAAGATCACAAGCATCCGATCTTTGGATTTCCGACATTGGTCCGGTTTAGTTGGGCAACCTGCAATACCTATACTAAAGGTGGTGCAGAGGTCTTATGGGAGTCTGACCAAACGGATGAAGATGGTGGTGGCAATAATAGCAATGGGAAGCGGCAGTTGAAGCTAAGCAACGTGGGTTTCACCACATCCAAGAGGAGAAGTGAAGAGATAGAATCAAGTGGTAAAGGACGCTGTAGNNNNNNNNNNATCCAGGAAACTTGA 879 0.4653 MGSECVVPEWASQPCIMGIDEAGRGPVLGPMVYGCLYCSRSYKNTLSTLSFADSKTLKEDKREELFEALKSNHSLGWAVDVIDPRDLSAKMLQKNKINLNEISHDSAMGLIHRVLKLGVLLTEVYIDTVGDAGKYEVKLSKVFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLDESAENMHRNFGSGYPGDPQTKSWLEDHKHPIFGFPTLVRFSWATCNTYTKGGAEVLWESDQTDEDGGGNNSNGKRQLKLSNVGFTTSKRRSEEIESSGKGRCXXXXIQET 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60525g00006 292 NCBIfam ribonuclease HII 16 229 IPR004649 GO:0004523|GO:0016070
Stsc60525g00006 292 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Stsc60525g00006 292 MobiDBLite consensus disorder prediction 245 269 - -
Stsc60525g00006 292 FunFam Ribonuclease 188 235 - -
Stsc60525g00006 292 Gene3D Ribonuclease hii. Domain 2 187 236 IPR023160 GO:0004523
Stsc60525g00006 292 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
Stsc60525g00006 292 SUPERFAMILY Ribonuclease H-like 15 231 IPR012337 -
Stsc60525g00006 292 FunFam Ribonuclease 2 186 - -
Stsc60525g00006 292 PANTHER RIBONUCLEASE H2 SUBUNIT A 7 283 IPR001352 GO:0003723|GO:0004523
Stsc60525g00006 292 Gene3D - 3 186 IPR036397 GO:0003676
Stsc60525g00006 292 MobiDBLite consensus disorder prediction 241 292 - -
Stsc60525g00006 292 CDD RNase_HII_eukaryota_like 17 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60525g00006 Stsc-Chr60525 37427 40188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60525g00006 1 284 Core DNA Replication Machinery Family AT2G25100 66.901 4.76e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60525g00006 K10743 - gmx:100779875 494.967