Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60523g00009 ATGGGCTGTGTGAATGGCAAGTGTTGTAGCCGGTACCCTGCACCATCAGAAGGTGGCTCCAGGGACTACAGAGAACTTGGCCCTTACCGTGCACAAAGGAAGCACATACTCACACAGAGACCATTGGAGGTAGCCACTGTTCCTTCACATAACTTCACTTTGGAGTATTCTGTTCTAACTCAGAGGGGATACTACCCTGATTCACCTGAAAAGGAAAACCAAGATAGTTTCTGCATTAGGACTCAGATTCAAGGTAACCCCAGTGTCCATTTCTTTGGTGTTTATGATGGTCATGGTCAATTTGGTGGACAGTGTGCAAACTTTGTTAAGGATAGGTTAGTAGAAACATTGTCTAATGACCCTGCATTGCTTGAGGACCCTGTTAAGGCCTATACTTCGGCATTCTTAACAACGAATTACGAATTGCATAATAGTGATGTCGATGATTCCATGAGTGGTACCACTGCAATTACCGTGCTAGTTATCGGTGATACCCTTTATGTTGCTAATGTTGGTGATTCAAGAGCGGTGCTAGCTGTTAAGGACGGGAATAGGATTATTGCTGAGGACTTGTCCTCCGATCAGACACCGTTTCGGAGAGATGAATATGAGAGAGTGAAACTTTGTGGGGCAAGGGTGTTGAGTGTTGATCAGGTAGAAGGGCTTAAGGATCCAAATATCCAAACTTGGGGCGATGAAGAAAGTCAGGGTGGCGATCCTCCAAGGTTGTGGGTTCAAAATGGAATGTATCCTGGAACTGCTTTTACAAGGAGTGTAGGGGATAATTTGGCAGAAACCATTGGTGTCATTGCTGTTCCTGAGGTGTCAACAGTTCAGCTTACGCCGAATCATCTTTTCTTTGTTGTTGCAAGTGATGGCATATTTGAGTTCCTATCGAGCCAAACTGTTATTGATATGGCAGCAAGCTATTCAGATCCCCGTGATGCTTGTGCTGCCATTGCTGGAGAGTCATATAAACTATGGTTAGAACATGAGAACCGAACAGATGATATAACAATTATCATTGTTCAGATCAAAGGCCTGTCAAATTTAGGTTCATCTCAAGTCGGATCAGGTGACATCAATGCCAGTATGTTAACAAGGTCCAAGAGGGAAAACGGAATATTCGAGACATCCACTACTACTGTGTCGGAAGTTTCTCGTTCTGTGAGGAGCGGAATCTCTGATTTACAGACATGCCAGCATGCAATCTCAATGAGAAGTCCAGCTATAGTCGCTCCGTCACCAACTGATCAAAGACCAATATAA 1269 0.4413 MGCVNGKCCSRYPAPSEGGSRDYRELGPYRAQRKHILTQRPLEVATVPSHNFTLEYSVLTQRGYYPDSPEKENQDSFCIRTQIQGNPSVHFFGVYDGHGQFGGQCANFVKDRLVETLSNDPALLEDPVKAYTSAFLTTNYELHNSDVDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIIAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGLKDPNIQTWGDEESQGGDPPRLWVQNGMYPGTAFTRSVGDNLAETIGVIAVPEVSTVQLTPNHLFFVVASDGIFEFLSSQTVIDMAASYSDPRDACAAIAGESYKLWLEHENRTDDITIIIVQIKGLSNLGSSQVGSGDINASMLTRSKRENGIFETSTTTVSEVSRSVRSGISDLQTCQHAISMRSPAIVAPSPTDQRPI 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60523g00009 422 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Stsc60523g00009 422 SUPERFAMILY PP2C-like 41 347 IPR036457 -
Stsc60523g00009 422 CDD PP2Cc 71 345 IPR001932 -
Stsc60523g00009 422 SMART PP2C_4 51 343 IPR001932 -
Stsc60523g00009 422 PANTHER PROTEIN PHOSPHATASE 73 344 IPR015655 GO:0004722|GO:0006470
Stsc60523g00009 422 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Stsc60523g00009 422 Gene3D - 40 347 IPR036457 -
Stsc60523g00009 422 Pfam Protein phosphatase 2C 77 320 IPR001932 -
Stsc60523g00009 422 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60523g00009 Stsc-Chr60523 33330 36802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60523g00009 1 350 PP2C-type Phosphatase Gene Family AT3G06270 74.788 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60523g00009 - - aprc:113872580 711.835