Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60522g00004 ATGCCACCAATTAAGTCACAAAACATTATTGCCCTAATAATATTCCTTTGTGTCTTCATAGTAAAAGTGTCTTCATCAAGTGAAGCAAATGCACTCTTGAAATGGAAGACCAGCCTTAGCAACAAAAGCCAAGTTATGTTGTCATCTTGGAAGAACGGCACAAGTCCATGCACATGGAAAGGAATTCAATGTCACAAATCAAAATCCACCATCACAAGCATCAATCTTGAAAACTTTGGAATCAAAGGTACACTCCACAATCTTACCTTCTCTTCATTCCCCAACCTCCACAACCTTAACATCTATGGAAACTCATTCTATGGAACCATTCCCTCACACATTGGTAACATGTCAAAAGTGATCAACACTTTGAACTTCTCTCTAAATAATTTTGAGGGTTCCATCCCTAAAGAATTGTGGACATTGAGGAGTTTACAAAAGCTTGATCTTTCTTTGTGTTATGATCTAAGTGGACCAATCCCTTCTTCCATTGCAAATTTGGCCAACTTAACATATCTAGACTTAGGAGAAAACAATCTTTCTAGCCACATTCCTGCTGAGATTAGGAAGCTGAGAAACCTTTGGTTTCTTGGTATTGCTTACAGTAATCTTTTTGGTTCCATTCCCCCTGAAATTGGAATGTTAAAGAATCTTGAGTATCTTGATTTGTCAGGAAATGCTCTCTCTGGTAATATCCCTTCTACAATTAGTAACATGAGAATTTTGCAGCAACTTTGTATTTCTAATAACACCCTCTCTGGCACAATCCCTACCTCAATTTGGAGCATGTCTAACTTGACATTGCTATGGCTTGATAGCAACCAACTTTCTGGATCCGTTCCTGCATCCATAGGAAACTTGTTCAATCTCAATTCACTTCGATTCGATTCGAATCGCCTCACCGGATCCATTCCTTCCACGATTGGAAAACTGACAAATCTCGTTGAGATCTTTCTTCGCTCTAACAATTTCTCAGGACACATTCCTGCTTCTGTTGGTAATTTGATCAACTTGGAAACCTTAAGTCTCCAAGAAAACAACCTCTCTGGATCTATTCCTGACACAATTGGAAACTTGAAAAGGCTCTCCATTCTTGAACTTTCCTTTAACAAACTCACTGGAGCCATTCCACAGACAATCAATAACATTACCAACATGGTTTACTTTCTAGTAGCCTCAAATAATCTCACTGGTCAATTGCCACCTCAAATTTGCTTAGGTGGTTCATTGAGTTACTTCAATGCTGATCACAACCATTTTACTGGTCCAGTCCCAAGTACCTTAAAGAAGTGCTCTAGTCTTGTTAGAATAACATTAGAGCACAACCATTTGGAAGGAGACATAACACAAGACTTTGGCATTTATCCTAATTTGGTGCATATTGACCTGAGTGACAACAAATTTTCTGGTCAAATTTCACCAAATTGGGGAAAGAGCCATAATCTTCAGAACTTGTTGATGTCTAACAATAATATCTCCGGTGCTATACCAATACAAATTGTGGAGGCTACCAAGCTAGGCAGACTTCGTCTTTCGTCCAATCAACTGAGTGGAAAGATTCCATCACAGATAGGATCATTGCATGATCTCCAAATCTTGCACCTAGCAGGAAATAAATTGAGTGGGAACATACCAAGACAAGTTGTGCAGTTACCTAACTTGTTGGAGTTGAATTTGAGCAACAACAAATTAGAGGGAAGCATCCCCTCTGATTTTCAATCAATGCAACCACTTTACTCTCTTGATCTTAGCTGCAATTTGTTGAATGGACCAATACCAGAAGTGCTTGGAGAGTTGAAGCAGTTGCGATCATTGAACCTCTCACACAATGATCTCTCTGGCAATATTCCATCTAGTTTTGATGGCATGTCAAGCTTGATTTCTATCAACATATCAGACAATCAACTAGAAGGCCCTCTACCAAACAATAAAGCCTTTCTTACTGCTTCAATTGAATCATTGAAAAATAACAAAGGCTTGTGTGGTGATGTCAATGGCTTAGTGCCATGCCCAAGCAGAAGTCCTAGCCACAAAAGTTACAAGGTCATGTTATTGGTATTACTTCTTGTCTTTGTAGTACTTGTGCTTTGTGTGGTGGTTGTTTCAGTATATGTTCTTTGTAGAAAAGCCAGAAAGAAAACTGCCCCAAATCAAGAAACGCAGGCCAAAGAACTATTTTCCATATGGAGCCATGATGGGAAAATGGCATTTGAAACTATCATTGAAGCTACCAACAATTTTGATGAGGAATATCTCATTGGAATTGGAGGGCAAGGATCTGTTTACAGGGCTGAGTTGCCTTCAGGTATGGTTGTTGCTGTCAAGAAGCTTCACACAGAAACATCCAACTTGAAAGCATTTGAAAACGAGATCAAAGCATTGACAAAGATCAGGCACCGAAACATCATGAAGCTATATGGTTTTTGCCAGCACACGCGGTTCTCATTTCTGGTTTACAAGTTCTTGGAAGGAGGAAGCTTGGATCAAGTGCTGAGAGATGAAACACATGCAACTTTGTTTGATTGGAGAAAGAGGGTGAATGTGGTTAAAGGAGTAGCGAATGCATTGTCATACATGCATCATGATTGCGTACCCCCTATTGTTCATCGCGACATATCAAGCAAGAACATTCTTTTGGACTCAGAATATGAAGCTCATGTGTCTGATTTTGGAACAGCTAAGTTCTTGAAACCTGGATCAAATTGGACCACGCTTGCAGTCACCTTTGGCTATGCGGCTCCAGAACTAGCACAGACTATGGAAGTGACAGAGAAATGTGATGTATATAGCTTTGGAGTGCTTTGTTTGGAGATTCTTATGGGAAAGCATCCAGCGGATCTGATAAGTTCATTGTTGTCACCATCAACAGCAGTAATGAGTTGCAATTTGTTATTGGTTGAAGTGATAGATAAGAGGGCTCCAAATCCAGAGGAGTCAGATGTTGGTGATATAATGTTGATAATGAAGTTGGCAATGAATTGCATGAGCCACAATCCAGAATGTCGACCAAGCATGCATCAAGTCTCCAAAGAGCTTATCATGGGAAAATTACCTTTTGCTAATCACCAATTTCCTATGATCACAATTGCACAACTCAACCAAGAATGCCAAACTCCACTTATGTGA 3126 0.3964 MPPIKSQNIIALIIFLCVFIVKVSSSSEANALLKWKTSLSNKSQVMLSSWKNGTSPCTWKGIQCHKSKSTITSINLENFGIKGTLHNLTFSSFPNLHNLNIYGNSFYGTIPSHIGNMSKVINTLNFSLNNFEGSIPKELWTLRSLQKLDLSLCYDLSGPIPSSIANLANLTYLDLGENNLSSHIPAEIRKLRNLWFLGIAYSNLFGSIPPEIGMLKNLEYLDLSGNALSGNIPSTISNMRILQQLCISNNTLSGTIPTSIWSMSNLTLLWLDSNQLSGSVPASIGNLFNLNSLRFDSNRLTGSIPSTIGKLTNLVEIFLRSNNFSGHIPASVGNLINLETLSLQENNLSGSIPDTIGNLKRLSILELSFNKLTGAIPQTINNITNMVYFLVASNNLTGQLPPQICLGGSLSYFNADHNHFTGPVPSTLKKCSSLVRITLEHNHLEGDITQDFGIYPNLVHIDLSDNKFSGQISPNWGKSHNLQNLLMSNNNISGAIPIQIVEATKLGRLRLSSNQLSGKIPSQIGSLHDLQILHLAGNKLSGNIPRQVVQLPNLLELNLSNNKLEGSIPSDFQSMQPLYSLDLSCNLLNGPIPEVLGELKQLRSLNLSHNDLSGNIPSSFDGMSSLISINISDNQLEGPLPNNKAFLTASIESLKNNKGLCGDVNGLVPCPSRSPSHKSYKVMLLVLLLVFVVLVLCVVVVSVYVLCRKARKKTAPNQETQAKELFSIWSHDGKMAFETIIEATNNFDEEYLIGIGGQGSVYRAELPSGMVVAVKKLHTETSNLKAFENEIKALTKIRHRNIMKLYGFCQHTRFSFLVYKFLEGGSLDQVLRDETHATLFDWRKRVNVVKGVANALSYMHHDCVPPIVHRDISSKNILLDSEYEAHVSDFGTAKFLKPGSNWTTLAVTFGYAAPELAQTMEVTEKCDVYSFGVLCLEILMGKHPADLISSLLSPSTAVMSCNLLLVEVIDKRAPNPEESDVGDIMLIMKLAMNCMSHNPECRPSMHQVSKELIMGKLPFANHQFPMITIAQLNQECQTPLM 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60522g00004 1041 PRINTS Leucine-rich repeat signature 218 231 - -
Stsc60522g00004 1041 PRINTS Leucine-rich repeat signature 551 564 - -
Stsc60522g00004 1041 SMART LRR_sd22_2 599 625 - -
Stsc60522g00004 1041 SMART LRR_sd22_2 215 234 - -
Stsc60522g00004 1041 SMART LRR_sd22_2 359 385 - -
Stsc60522g00004 1041 SMART LRR_sd22_2 263 289 - -
Stsc60522g00004 1041 SMART LRR_sd22_2 167 196 - -
Stsc60522g00004 1041 SMART LRR_sd22_2 311 340 - -
Stsc60522g00004 1041 Gene3D Phosphorylase Kinase; domain 1 707 821 - -
Stsc60522g00004 1041 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
Stsc60522g00004 1041 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 379 674 - -
Stsc60522g00004 1041 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 280 378 - -
Stsc60522g00004 1041 FunFam MDIS1-interacting receptor like kinase 2 822 1018 - -
Stsc60522g00004 1041 SUPERFAMILY RNI-like 73 397 - -
Stsc60522g00004 1041 SUPERFAMILY Protein kinase-like (PK-like) 732 1012 IPR011009 -
Stsc60522g00004 1041 FunFam Nuclear pore complex protein NUP107 25 185 - -
Stsc60522g00004 1041 FunFam Leucine-rich receptor-like protein kinase family protein 186 279 - -
Stsc60522g00004 1041 ProSitePatterns Tyrosine protein kinases specific active-site signature. 867 879 IPR008266 GO:0004672|GO:0006468
Stsc60522g00004 1041 Coils Coil 777 797 - -
Stsc60522g00004 1041 SUPERFAMILY L domain-like 409 651 - -
Stsc60522g00004 1041 PANTHER LEUCINE RICH REPEAT KINASE 2 333 1016 - -
Stsc60522g00004 1041 Pfam Leucine rich repeat 552 612 IPR001611 GO:0005515
Stsc60522g00004 1041 Pfam Leucine rich repeat 313 372 IPR001611 GO:0005515
Stsc60522g00004 1041 Pfam Leucine rich repeat 217 276 IPR001611 GO:0005515
Stsc60522g00004 1041 Gene3D Transferase(Phosphotransferase) domain 1 822 1020 - -
Stsc60522g00004 1041 FunFam Leucine-rich repeat receptor protein kinase MSP1 709 821 - -
Stsc60522g00004 1041 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Stsc60522g00004 1041 Gene3D Ribonuclease Inhibitor 184 279 IPR032675 -
Stsc60522g00004 1041 Gene3D Ribonuclease Inhibitor 280 379 IPR032675 -
Stsc60522g00004 1041 SMART LRR_typ_2 287 311 IPR003591 -
Stsc60522g00004 1041 SMART LRR_typ_2 599 622 IPR003591 -
Stsc60522g00004 1041 SMART LRR_typ_2 167 191 IPR003591 -
Stsc60522g00004 1041 SMART LRR_typ_2 551 574 IPR003591 -
Stsc60522g00004 1041 SMART LRR_typ_2 263 286 IPR003591 -
Stsc60522g00004 1041 SMART LRR_typ_2 335 359 IPR003591 -
Stsc60522g00004 1041 SMART LRR_typ_2 215 239 IPR003591 -
Stsc60522g00004 1041 Gene3D Ribonuclease Inhibitor 380 679 IPR032675 -
Stsc60522g00004 1041 ProSiteProfiles Protein kinase domain profile. 747 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60522g00004 1041 Pfam Protein kinase domain 749 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60522g00004 Stsc-Chr60522 64277 67653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60522g00004 9 914 Receptor kinase-like Gene Family AT4G08850 42.827 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc60522g00004 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60522g00004 - - ahf:112797681 1460.66