Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60521g00023 ATGCCTCCTGTAAGAGATCCCTTACCCAAACCAAACCCTAATATCTTATCCTTCTTCCTCAAGCCAATCATCATGCTCCTCATCACCGCCCTCTTCTTCCTCTTCCTTGGCTTCGCCGCCTTCATCCTCCTCCACCTCTTCCTCATTGGCGGCGCCCTCCACCGCCTCCGCAACCGCCCCTACTCCTCCTCCCTCCACCCCTCCTCCTCCTCCTCCGATGCCCTCTCCCCGCGCCACCTCACCAACCTCCCCCATTTCCGCGTCTCCAGGGCATCCCCCTCCCCTGGACCCGATTCCCGCTGCGTGGTCTGCCTCGACGGTTTCCGGAACGGCCAGTGGTGCAGGAACCTCGCCGCTTGCGGCCACGTGTTCCATCGGAGGTGCGTGGACACGTGGCTTATGAAGGTCGCCGCTTGCCCCACATGCCGGACACCCGTTCGATTAAATGCCGCTGTAACAAGAGATGATCACGCTCCCCAATTTTGGACCTGTGCTTCAGCTGACTCCACCGCTCTTCCCACTTCATAG 528 0.6042 MPPVRDPLPKPNPNILSFFLKPIIMLLITALFFLFLGFAAFILLHLFLIGGALHRLRNRPYSSSLHPSSSSSDALSPRHLTNLPHFRVSRASPSPGPDSRCVVCLDGFRNGQWCRNLAACGHVFHRRCVDTWLMKVAACPTCRTPVRLNAAVTRDDHAPQFWTCASADSTALPTS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60521g00023 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 148 IPR013083 -
Stsc60521g00023 175 Pfam Ring finger domain 100 143 IPR001841 -
Stsc60521g00023 175 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 155 - -
Stsc60521g00023 175 SMART ring_2 101 142 IPR001841 -
Stsc60521g00023 175 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Stsc60521g00023 175 SUPERFAMILY RING/U-box 96 150 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60521g00023 10 172 C3H Transcription Factor Family AT2G18670 42.945 3.42e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60521g00023 - - gmx:102670430 177.563