Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60521g00022 ATGGCCAACATCTTTCTACACTTAGCTAAAGCAGACAGCTTTCTGTCTCAATCACAACAACCATCTTTTTTTCTTCCTCACCCAAACCCACCACCACCACCTTCAGCTGTTGTTCGATCTGATAGTTTCACCTTCGACGAAAAGGCCTTGAAGGTGAGCCCAAGCATACTCCTCATCATCATCATCCTGGCCATTGTTTTCTTCGTTTCTGGTTTGCTTCACCTCCTTGTTAGGTTCCTATGGAGGCCTCAGAGCAGAGACCCTGATGATTTTGACAATGGCACTGCACTTCAAGGCCAATTGCAGCAACTCTTCCATCTCCATGATGCTGGTGTTGATCAGTCCTTCATAGACACGCTCCCTGTGTTCCACTACAAAGCCATCATAGGCTTGAAGAACCCCTTTGACTGTGCTGTTTGTTTGTGTGAGTTTGAACCAGAAGACAAGCTTAGATTGTTGCCCAAATGTAGCCATGCTTTTCACATGGACTGCATTGACACATGGCTTCTATCTCATTCTACTTGTCCTCTCTGTAGAGCTACCTTGCTCCCTGATTTCTCTTCTAACAACACCAACAACACGTGTTCCCCCATTGTTCTTGTGCTTGAATCCGGGAGTGAGACTTCCAGGGAGATTACTGCTCCAGAAAGAGATGCTTCTGTCATGACATCCAATTCCCGTGAATTTGGATCATCAACAAGGATTGATTTTCAAAACAAGTCAGGTGAGTTGACTTCTTCAGGTGACAGCAACAAAATTCTTAATCTTGATACAAATGGTGTGGAAAAAGTGGTGGCAGTGAAGTTGGGAAAGTTTAGGAATGTTGATGGTGGTGGAGGTGGAGAAGGAAGTAGTAGCAGCAACAACAATGTGGATGGAAGGAGGTGCTTCTCAATGGGGTCATTTGCTTATGTTATGGATGAGAGTTCTTCACTTCAGGTACCAATAAGAACTCCAATGAAGAAGAAGCAGTCAAGTTGCAATAAGAAGAGTTCTTTGCCTTTGACACCGGGGCACAGGCCTGCAATGTCAGAATGTGACTCTGAATCCAGAAGAGATTTCAGATTTGCATGCTTTGATGCCACTGCTAAAATTGAGGATCTTGGTGGTGCTGAAACTAGTAATGGGGCTGCAATTGGAAGGAGCAGAAAAGAGAGCTTCTCTATATCAAAGATTTGGCTGAGAGGGAAGAAGGAGGAGAAGCAAAATGCAGTTGGACATTCATCCAGAAGAGCGGTTTCCTTCCGGTTTCCGGTGTCACAGAAGAATGGTGTTAATGATAGTGGTAGTTCAGAAGAGATGAAGGGTAATAAGAATGTGAAATTTGATACAAGTAGTACAATTTCAGAGATGGATATTGCTAAATGGGAGAATGGAGGAAGTGAATATGGGTTTGATGAGGAAAGCCAAAGCTGCAATAGCATTGATTCTCAAGCTAGAGCACCTTCTTTTGCTAGAAGGACTTTGCTTTGGCTCACTGGAAGACAGAACAAGGTTGTTCATTCTTCTTCTGTTTCCAACATCTAG 1527 0.4368 MANIFLHLAKADSFLSQSQQPSFFLPHPNPPPPPSAVVRSDSFTFDEKALKVSPSILLIIIILAIVFFVSGLLHLLVRFLWRPQSRDPDDFDNGTALQGQLQQLFHLHDAGVDQSFIDTLPVFHYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRATLLPDFSSNNTNNTCSPIVLVLESGSETSREITAPERDASVMTSNSREFGSSTRIDFQNKSGELTSSGDSNKILNLDTNGVEKVVAVKLGKFRNVDGGGGGEGSSSSNNNVDGRRCFSMGSFAYVMDESSSLQVPIRTPMKKKQSSCNKKSSLPLTPGHRPAMSECDSESRRDFRFACFDATAKIEDLGGAETSNGAAIGRSRKESFSISKIWLRGKKEEKQNAVGHSSRRAVSFRFPVSQKNGVNDSGSSEEMKGNKNVKFDTSSTISEMDIAKWENGGSEYGFDEESQSCNSIDSQARAPSFARRTLLWLTGRQNKVVHSSSVSNI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60521g00022 508 CDD RING-H2_EL5-like 136 179 - -
Stsc60521g00022 508 MobiDBLite consensus disorder prediction 317 347 - -
Stsc60521g00022 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 184 IPR013083 -
Stsc60521g00022 508 SUPERFAMILY RING/U-box 116 189 - -
Stsc60521g00022 508 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 51 393 - -
Stsc60521g00022 508 MobiDBLite consensus disorder prediction 317 333 - -
Stsc60521g00022 508 SMART ring_2 137 178 IPR001841 -
Stsc60521g00022 508 Pfam Ring finger domain 136 179 IPR001841 -
Stsc60521g00022 508 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Stsc60521g00022 508 FunFam RING-H2 finger protein ATL46 99 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60521g00022 Stsc-Chr60521 100649 103176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60521g00022 71 508 C3H Transcription Factor Family AT2G18650 44.956 4.17e-101 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60521g00022 - - gmx:100797283 612.068