Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60520g00021 ATGTCCTCTCTCTTTTCCCCTCTACCACCACCTCCGCCGCCGCCTCAACCACCACCATCAACAGCAGCCGCCTTCGCCACCACCTATCTCACCAACCTCGGATTCGGTTACTCCATAGCCATAGCACTCGGGTTTCTCTTCCTCTTCTCCACAATCATCCTCTCTTCCTACCTATGCTGCCGCGCTCTCCGCCACAGCAACAGTAACCGCCGAAGAAACGCAAACGACGGCGTCGTTTTGCCACGTGTGATTTTCGTAGCGGAAAACGACGTTGAAAATAATAACCAGGGTGTTGGTGGTGGAAACGACGACGTCGTTTTGGGTTTGGATCAGATGGTTATTAACTCGTACCCGAAGTTTGAGTTTAACGGCAAGAACAACGCTGTGAACGTTGACAGCATCTGCTCGATTTGTTTGTGTGAGTACAAGGATTTGGAGATGCTGAGGATGATGCCGGAGTGTCGTCACTGCTTCCACGTGTCGTGTCTTGATTCGTGGCTCAAGCTTAACGGCTCTTGCCCTGTTTGCCGGAACTCTCCCATGCCGACGCCACTCTCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCTCTCTATGCCGCTGATCGGAGGGGAAGGACTTGA 621 0.5378 MSSLFSPLPPPPPPPQPPPSTAAAFATTYLTNLGFGYSIAIALGFLFLFSTIILSSYLCCRALRHSNSNRRRNANDGVVLPRVIFVAENDVENNNQGVGGGNDDVVLGLDQMVINSYPKFEFNGKNNAVNVDSICSICLCEYKDLEMLRMMPECRHCFHVSCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSLYAADRRGRT 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60520g00021 206 CDD RING-H2_EL5-like 134 177 - -
Stsc60520g00021 206 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Stsc60520g00021 206 MobiDBLite consensus disorder prediction 1 20 - -
Stsc60520g00021 206 Pfam Ring finger domain 135 177 IPR001841 -
Stsc60520g00021 206 SMART ring_2 135 176 IPR001841 -
Stsc60520g00021 206 SUPERFAMILY RING/U-box 129 182 - -
Stsc60520g00021 206 PANTHER RING-H2 FINGER PROTEIN ATL67 11 204 IPR044289 GO:0016567|GO:0016740
Stsc60520g00021 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 182 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60520g00021 Stsc-Chr60520 107311 108089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60520g00021 31 197 C3H Transcription Factor Family AT5G07040 41.667 1.13e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60520g00021 - - adu:107472862 274.633