Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60520g00006 ATGGATCCTCCATCTAAGAGCTGGAGCATCCACACCAGATCCGAAATCATCGCCAAATACCAGATCCTGGAGCGCGTCGGCGCCGGAGCTTACGCCGACGTGTACCGCGGCCGTCGCCTCTCCGACGACCTAATCGTCGCGCTCAAAGAAATCCACGATTACCAGTCCGCGTTACGCGAAATTGATGCGCTTCAGATTCTCCAGGGCTCACCAAACGTCGTCGTTTTGCACGAGTACTTTTGGCGCGAAGATGAGGACGCTGTCCTCGTTCTCGAGTTCCTAAGGACGGATCTCGCCACCGTCATTGATGACGCTAAGAAGAAGAAGGGACTCTCCGTTGGGGAGATGAAGCAGTGGATGATGCAGATCCTATCCGGTGTTGACGCGTGTCACCGGAACATGATCGTGCATCGGGATTTGAAGCCCGGTAATCTGTTGATCGGAGATGATGGAATTCTCAAGTTGGCAGATTTCGGACAGGCAAGGATACTTGTGGAGCCAGGATATGATTCTTCTGAGGAGATTCCACAAAATTATGAACATGATGCATCTTCAAACCAAGCAGGGTCTGGAAATCAAGAGCAAGGAACTGTCCTTCGTGAAGAATATTTTAGAGTCTTGGATGAACTGAAAACAAAGAGATCTGCAGATGACACTGATAAGGATACAAACATTCCTGATGGAAATACCTCTTGTCTTGCGACGTGCACAACAAGTGATATGGATGATGATCCTTTGAAATCCAATTTTAGTTATGAAGCAAGGGAGGACGAAGAAGAAGAACCGGGTTGCCTCACGTCATGCGTTGGAACTCGCTGGTTTAGGGCTCCTGAGTTGCTTTACGGATCCACAAACTATGGTTTAGAAATTGATCTATGGTCTTTGGGATGTATATTTGCAGAGCTTTTAACACTGGAGCCCTTATTTCCTGGAACAGCCGATATTGATCAGCTTAGTAGGATTATTAATGTTTTGGGCAACCTCGATGAGAAAGCATGGCCAGGTTGCTCCAAACTTCCCGATTATGGAATAATCTCGTTTAGTAAGGTGGAAAACCCTCCTGGTCTTGAAGCTTGCCTGCCCAATCGCTCCCCCGATGAAGTGTCTCTAGTAAAAAAGCTGGTTTGTTATGATCCGGCCAAGAGAGCTACGGCAACAGAGCTACTCCATGACAAGTACTTTAATGAAGAACCTCTTCCCATTCCAGTTTCAGAGTTGCATGTTCCCTTGAACAGGAAGAGAGAAGACGAGAACTCCCCGTGGCATGATTACAATTACGGGGGTTCTGATTCTGACATGGAGGACTTTGGCCCTGTGAATATCACAAAAACTGTTACTGGTTTCTCCATACAGTTTCCATGA 1362 0.4728 MDPPSKSWSIHTRSEIIAKYQILERVGAGAYADVYRGRRLSDDLIVALKEIHDYQSALREIDALQILQGSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIDDAKKKKGLSVGEMKQWMMQILSGVDACHRNMIVHRDLKPGNLLIGDDGILKLADFGQARILVEPGYDSSEEIPQNYEHDASSNQAGSGNQEQGTVLREEYFRVLDELKTKRSADDTDKDTNIPDGNTSCLATCTTSDMDDDPLKSNFSYEAREDEEEEPGCLTSCVGTRWFRAPELLYGSTNYGLEIDLWSLGCIFAELLTLEPLFPGTADIDQLSRIINVLGNLDEKAWPGCSKLPDYGIISFSKVENPPGLEACLPNRSPDEVSLVKKLVCYDPAKRATATELLHDKYFNEEPLPIPVSELHVPLNRKREDENSPWHDYNYGGSDSDMEDFGPVNITKTVTGFSIQFP 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60520g00006 453 SMART serkin_6 20 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60520g00006 453 ProSiteProfiles Protein kinase domain profile. 20 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60520g00006 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Stsc60520g00006 453 Gene3D Transferase(Phosphotransferase) domain 1 255 400 - -
Stsc60520g00006 453 Gene3D Transferase(Phosphotransferase) domain 1 9 197 - -
Stsc60520g00006 453 SUPERFAMILY Protein kinase-like (PK-like) 13 400 IPR011009 -
Stsc60520g00006 453 Pfam Protein kinase domain 20 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60520g00006 453 Pfam Protein kinase domain 261 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60520g00006 453 PANTHER CELL DIVISION PROTEIN KINASE 19 400 - -
Stsc60520g00006 453 FunFam Cyclin-dependent kinase F-1 11 105 - -
Stsc60520g00006 453 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60520g00006 Stsc-Chr60520 22583 25408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60520g00006 4 453 Core Cell Cycle Gene Families AT4G28980 64.211 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Stsc60520g00006 Pkinase 1.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60520g00006 - - ahf:112726382 857.44