Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60520g00002 ATGGCTGAGGCACTTGTTGCTGGAGCTTTTCTTTCAGGCTTCATCAACGTTGTTTTTGACAGACTCATTTCATCTGAGTTTGTTAAGTTAGTGGTGGGCAAGAAGCTGAACCGACAGATGGTTGAGAGGCTGAAGACTGCTCTCTTGGCTGCCGAAGCTCTGGTCGCCGACGCCGAGCAGAAGCAGGATGCTGTCTACACTGCTGATGAGTTGCTAGACCGTGTCCAGATCAAAGCTGAAATTCGCAAGAAGGTACGAATTCATCTTCCTCGCTTCCTTAAGTTGTCTAATAGGAAGATGGTGAACAAGATAGAAGAGGTGGTTAAAAGAATAGAAGATCTTCAGAAACTCAAAGATACCCTTGGTCTTGAAAAGATTCCAACAGGTAGCTCTTCATGGAGAACTCCATCCACTTCTCTTGTAAAGGGGAATGTGTACGGCAGGGATGATGACCAGCAGGCATTAATCAAGATGCTGCATGACAACAATGATCATAAGTTGTCAGTCATCTCTATTGTTGGTATGGGCGGGGTTGGTAAAACAACTTTAGCACAATGCCTGTACAACAATGAGGATTTGATGAAGGGGTTTGATATGAAAGCATGGATTTGTGTTTCTGAAAATTTTGATATCATTGAGATTACAAAGAATATTATAAAGGGGATCACTTCAGGTGTTTGTAGTCTTGACAGCTTCGATTTACTTCAACAAGATTTGAGGAGAAAATTGTCAGAAAAGAAGTTCTTTATTGTTTTGGATGATGTTTGGAGTGACGATGGTGAAAAGTGGAGTAATTTTATAACCCCGTTTCAACATGGGACAAAGAGAAGCACTGTTCTTCTAACTACCCGCAAAGAAAATGTTGGTTCTGTAGTCCAGCATTATAACTCTTACCTTCTCAATGGATTATCAGATGATTACTGCTGGTCTATTTTTGCGGACAATGCATCCTTTCCTGAATCAAATGGGAGGTCAGAACTGGAAGAAATAGGTAGAAAGATCGTCGAGAAATGTGATGGCTCGCCATTAGCAGCAGAAACACTTGGACGCTTGTTGCGCACAAAGCATGATGTTTCGGAATGGAATAAAATACTATCGAGCGACATTTGGGAATTTCCTATGATGGATAGTAAGATCATTCCTGCATTGTTAATAAGTTACTATCATTTGCCTGCACATTTAAAGCGTTGCTTTGTTTATTGTTCATTATATCCCAAAGATCATCAATTTGATAAAGATGAATTAATCTTGCTATGGATGGCTGAAGATCTTTTGCGACCACCAAAGCGGGGACAAACTTTAGAAGAAGTTGGTTGCGAGTGTTTTGATGACTTGGCTACAAGACTTTTTTTCAAGCAAGTCGTGATTAATAATGAGATGTATTTTGTGATGCACGATCTCATGCATGACTTGGCAACTTTTCTTGCAGGAGAATTTTATTGTAGATTATCAAAACAACCTAGTGAAAAAGAAGAGATAAGAGTTCTAACTCGTCATTTGTCCTACACTCATCCAATCTCTAGAGAAACCTATTTCTCTAGTAAAATAGAATCTTTGAGGACATTTTTGTACATCAATCGTAGTCCTTTTCAGACTAGGAAAGAAAGTACAATGTTACCAGGTGACCTATTGTCAAAGAATAAATACTTGAGAGTTTTATCGTTTGATAAACTCAGTATATTACATGATTCAATAGGTGAATTGATCCACTTGCGCTATTTGAATCTCTCTTGGAGTATTATAGAGCATCTTGATATAACAGGCACGCCTCTAAAAGAAATGCCAAAAGGAATGGGCAAATTGAAGCAGCTGCACACTATGAGCTACTATATCGTAGGCAAGTCTGAAGACAATGGAATCCAAGAGTTAGGAGGGCTTGAAGCAAGGAGTGCAAGGTTAAGAGATAAGAAGCACATTGAGCGCTTATTGTTGAAATGGTCTTCAGGTGATGATATGGTTTTAGACTCACAAACTGAAAGAGATATACTCCACAGCTTGCAGCCACGCACTGACTTGAAAAAGTTGACAATTGATGGATACGAAGGTACAATATTTCCATATTGGATTGGGCATTCCTTCTACCAAAACATTACAAGTGTGTATCTGTTGGATTGCAAGAATTGCTGCATGTTGCCTTCACTTGGACAGCTGCCATCTCTTCAGTCCCTATACATTGGAGGTTTTGATCAACTGAAGAGTGTTGGCATGGAGTTTTACAGGAATGAAGGCAGTCAGTATTCTTCGCCTAGTGCACCATTTCCCTCACTCGAGAAATTGGAATTCTGTAACATGCCAAGTTGGGAGGAGTGGTACTTACCTAACTCAGAAGCTTTTCCTCAGCTGAAGTGGCTTCGAATAGCATTTTGTGACTAG 2373 0.3991 MAEALVAGAFLSGFINVVFDRLISSEFVKLVVGKKLNRQMVERLKTALLAAEALVADAEQKQDAVYTADELLDRVQIKAEIRKKVRIHLPRFLKLSNRKMVNKIEEVVKRIEDLQKLKDTLGLEKIPTGSSSWRTPSTSLVKGNVYGRDDDQQALIKMLHDNNDHKLSVISIVGMGGVGKTTLAQCLYNNEDLMKGFDMKAWICVSENFDIIEITKNIIKGITSGVCSLDSFDLLQQDLRRKLSEKKFFIVLDDVWSDDGEKWSNFITPFQHGTKRSTVLLTTRKENVGSVVQHYNSYLLNGLSDDYCWSIFADNASFPESNGRSELEEIGRKIVEKCDGSPLAAETLGRLLRTKHDVSEWNKILSSDIWEFPMMDSKIIPALLISYYHLPAHLKRCFVYCSLYPKDHQFDKDELILLWMAEDLLRPPKRGQTLEEVGCECFDDLATRLFFKQVVINNEMYFVMHDLMHDLATFLAGEFYCRLSKQPSEKEEIRVLTRHLSYTHPISRETYFSSKIESLRTFLYINRSPFQTRKESTMLPGDLLSKNKYLRVLSFDKLSILHDSIGELIHLRYLNLSWSIIEHLDITGTPLKEMPKGMGKLKQLHTMSYYIVGKSEDNGIQELGGLEARSARLRDKKHIERLLLKWSSGDDMVLDSQTERDILHSLQPRTDLKKLTIDGYEGTIFPYWIGHSFYQNITSVYLLDCKNCCMLPSLGQLPSLQSLYIGGFDQLKSVGMEFYRNEGSQYSSPSAPFPSLEKLEFCNMPSWEEWYLPNSEAFPQLKWLRIAFCD 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60520g00002 790 Coils Coil 41 61 - -
Stsc60520g00002 790 Gene3D - 386 474 IPR036388 -
Stsc60520g00002 790 FunFam Probable disease resistance protein At1g61300 131 296 - -
Stsc60520g00002 790 Gene3D - 136 298 IPR027417 -
Stsc60520g00002 790 PRINTS Disease resistance protein signature 169 184 - -
Stsc60520g00002 790 PRINTS Disease resistance protein signature 242 256 - -
Stsc60520g00002 790 PRINTS Disease resistance protein signature 338 352 - -
Stsc60520g00002 790 PRINTS Disease resistance protein signature 695 711 - -
Stsc60520g00002 790 PANTHER DISEASE RESISTANCE PROTEIN RP 45 767 IPR044974 GO:0006952
Stsc60520g00002 790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 401 IPR027417 -
Stsc60520g00002 790 Pfam NB-ARC domain 149 366 IPR002182 GO:0043531
Stsc60520g00002 790 Gene3D - 302 385 IPR042197 -
Stsc60520g00002 790 Gene3D Ribonuclease Inhibitor 526 790 IPR032675 -
Stsc60520g00002 790 Coils Coil 97 124 - -
Stsc60520g00002 790 SUPERFAMILY L domain-like 463 789 - -
Stsc60520g00002 790 FunFam Probable disease resistance protein At1g63360 387 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60520g00002 Stsc-Chr60520 4208 7071 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60520g00002 167 355 WRKY Transcription Factor Family AT5G45050 26.154 8.36e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60520g00002 - - aip:107624780 1085.09