Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60519g00016 ATGAACACGCCTCACACACAACAACAAGAGGAACACGATGATGCCCTTCTCTGCGAAGAAGAGCACCCCATTTTCGATGATGATGACAACCACCAAACCCTTCTCATGGACTCGGAACACGACCACCACATCCTCTCTCTCATTTCCAAACAGACACACATTCACATTCACACCAACGCTGCTTTTCTCGAGCCTCCTCGAAACGAAGCCGTTTTATGGATTTCCAGAGTTAGCTCCTTCTATGGCTTCACTCCTTTGACCACTGTTCTTGCAGTCAACTACTTCGACAGGCTCCTCACAACCCTAACCTTTCAGAGTGATAAGCCATGGATGATTCAGCTCACTGCTGTTGCGTGTTTATCTCTTGCTGCTAAAATGGAAGAGATCCATGTCCCACTTCTCTTGGACCTCCAAGTGGAGGAACCCGAGTTCTTGTTTGAAGCCAAGACTGTTCAGAGAATGGAGCTTCTTGTGTTGTCTACACTCCAATGGAGGATGAACCCTGTCACCCCAATTTCCTTCTTTGAACACATTGTTAGAAGGATTGGTTTGAAGAGCCCTTTGCATTGGGAGTTCTTATGGAGATGCCAGCGTGTTCTTCTTTGTCTCATTCACAATTCAAGGTTTATGAGTTATCTCCCTTCTACATTGGCTGCTGCTACCATGATCCATGTTATTAAAGAGATTGAGCCTTTTAATGCTATGGATTACATAAATCAACTCATGGGGTTACTCAAGATTAGTCAGGAACAAGTGAATGAGTGCTACAAACACATAATGAAACAATTGGTGTTGCATCATGAAGGCATTTACAATCTTTGCCAGAAACGCAAAAGGGTATCTGAACCAAGTAGCCCTGGTGGTGTCATTGATGCATCTTTCAGCTGTGACAGCTCAAATGATTCGTGGACGGCGGCAGCATCTTCGATCTCACCTTCACTATCACTTGAGCCAATGTTTAAGAGGAGCAGAGCTCCGGACCAGCTGATGCGATTTGCTTCAGTAAATCGTGTGTCCATTGATGTTATAGACAGTCCTCCTTAA 1044 0.4483 MNTPHTQQQEEHDDALLCEEEHPIFDDDDNHQTLLMDSEHDHHILSLISKQTHIHIHTNAAFLEPPRNEAVLWISRVSSFYGFTPLTTVLAVNYFDRLLTTLTFQSDKPWMIQLTAVACLSLAAKMEEIHVPLLLDLQVEEPEFLFEAKTVQRMELLVLSTLQWRMNPVTPISFFEHIVRRIGLKSPLHWEFLWRCQRVLLCLIHNSRFMSYLPSTLAAATMIHVIKEIEPFNAMDYINQLMGLLKISQEQVNECYKHIMKQLVLHHEGIYNLCQKRKRVSEPSSPGGVIDASFSCDSSNDSWTAAASSISPSLSLEPMFKRSRAPDQLMRFASVNRVSIDVIDSPP 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60519g00016 347 CDD CYCLIN_AtCycD-like_rpt1 67 164 - -
Stsc60519g00016 347 Pfam Cyclin, C-terminal domain 169 264 IPR004367 -
Stsc60519g00016 347 SUPERFAMILY Cyclin-like 38 167 IPR036915 -
Stsc60519g00016 347 FunFam D6-type cyclin 49 167 - -
Stsc60519g00016 347 SUPERFAMILY Cyclin-like 151 275 IPR036915 -
Stsc60519g00016 347 SMART cyclin_7 72 160 IPR013763 -
Stsc60519g00016 347 Pfam Cyclin, N-terminal domain 58 167 IPR006671 -
Stsc60519g00016 347 CDD CYCLIN_AtCycD-like_rpt2 169 257 - -
Stsc60519g00016 347 FunFam CYCLIN D32 168 257 - -
Stsc60519g00016 347 Gene3D - 64 167 - -
Stsc60519g00016 347 Gene3D - 168 259 - -
Stsc60519g00016 347 PANTHER CYCLINS 40 261 IPR039361 -
Stsc60519g00016 347 SMART Cyclin_C_2 169 286 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60519g00016 Stsc-Chr60519 110033 111601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60519g00016 41 337 Core Cell Cycle Gene Families AT5G67260 51.974 3.40e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60519g00016 K14505 - gmx:100785030 424.476