Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60519g00007 ATGAAGGGTGAAGGAGAGAGAGTGGCGGAGAGTGGAGGCGGAGAGAGAAGGTATAAAGGGATAAGGATGAGGAAGTGGGGAAAGTGGGTTGCTGAGATTAGAGAACCAAACAAGCGTTCAAGGATTTGGCTCGGTTCATACTCAACCCCTATCGCCGCCGCTAGAGCCTACGACACCGCCGTCTTCTACCTCCGAGGACCCTCCGCCCGCCTCAACTTCCCCGAGTTTCTCGCCGGAGAACCCCCTCCTTCCCTCCTCGGCGCCTGCGACATGTCCGCCGCTTCCATAAGGAAGAAAGCCACCGAGGTCGGCGCCAGAGTCGATGCCCTCCAGGCCGCCACCCTGCACCACCACCACCACCTGGCTCCGCCACAGCAGGAGCTTATATCGGGGCGGTCGGGAGATTTTGCGGAGCGGGTCGATTTGAACAAGATACCAGAACCCGAAGATTGTGAATGGGAGATGAAATGA 471 0.5839 MKGEGERVAESGGGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSARLNFPEFLAGEPPPSLLGACDMSAASIRKKATEVGARVDALQAATLHHHHHLAPPQQELISGRSGDFAERVDLNKIPEPEDCEWEMK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60519g00007 156 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Stsc60519g00007 156 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Stsc60519g00007 156 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Stsc60519g00007 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 152 - -
Stsc60519g00007 156 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Stsc60519g00007 156 SUPERFAMILY DNA-binding domain 17 74 IPR016177 GO:0003677
Stsc60519g00007 156 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Stsc60519g00007 156 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Stsc60519g00007 156 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Stsc60519g00007 156 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60519g00007 Stsc-Chr60519 54104 54574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60519g00007 15 156 AP2-EREBP Transcription Factor Family AT5G67190 56.977 1.94e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc60519g00007 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60519g00007 K09286 - gmx:100783682 219.935