Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60519g00005 ATGTGGGATCTGAATGACTCTCCAGACAAGAGAAAGAACTACGAGTCTGAAGAAGCTTGTTCTTCACCCATGGACGATGACGTCAGAGGCAAGACCCTCCGATCTGCCTCCAATTCCAGCTCCTCCGCCGTCCTTCTAGAAGACGGATCCGAAGAAGATGAAGAACAAGCCAGCAGAAACAACAACAACAAAACCAACAGCAGCAAGATATTCGGCTTCTCCGTCACTCCCATGGACGCCGACGACAACGACAACCCTCCCGTGACTCATCAGTTTTTCCCGGTGAAGGACTCCGGCTCTGGCGGAGGCGGAGGAGTAGGAGGAGGAGGAAGCTCGTCGTCGTCGTCGTTCCCTCGAGCTCACTGGGTTGGCGTGAAGTTCTGCCAATCGGAAGGAGTAGTTGGCGGCGGTGGTGGAAAATCGGGAGGAGCGGTGGAAGCTTCTCAGCCGATGAAGAAGAGCCGGAGAGGACCGAGGTCTCGGAGCTCACAGTATAGAGGAGTGACTTTTTACAGAAGAACGGGTCGTTGGGAATCTCATATTTGGGATTGTGGAAAACAAGTCTACCTGGGTGGATTTGACACCGCACATGCAGCTGCTCGTGCTTATGATAGAGCTGCAATTAAGTTCCGGGGAGTGGAGGCTGACATTAACTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGACGAATTTAACAAAGGAAGAATTTGTGCACGTACTTCGGCGACAAAGCACTGGGTTTCCAAGAGGGAGTTCCAAATATAGAGGTGTTACCTTGCACAAGTGTGGAAGATGGGAGGCTCGTATGGGCCAATTTTTAGGCAAAAAGTATGTTTATCTGGGCCTCTTTGACACTGAGATTGAAGCTGCCAGGGCTTATGACAAAGCAGCAATAAAATGCAATGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGAAAACGAGCTTAATTCTGAATCGTCAGGAGGCAATGGTGCAGGAGATCACAATCTGGATCTAAGTCTGGGCAATCCAAGTTCAAAGCATGGCAATAATCAAGCACCGGTGACAACTGATCACCGTATGACATCCAATTGGCACAATGACGGAGCCAATAATAATAAGCATAAGCTGGTGAATATACTACCAAAACCAAGTAGTAGTGGTAGAAGCAACATAGATCAGAATGGAGGACAGCGTGAGAGTGAAGGGATGGCGATGAGGCTGCTAAGTCATCAAACTCATCATTTTCATAATCAAACTCCACTCTCCAATGAAATGCATCGATACGGCGGTCCTTATTATAGGTCCCATGCACCTGCACCTGGAGACCCTCCTCCTCCTCCTCCTCAAATGCTTCACCACGCTTTTCCACCTAATTTTCATTTTCCCACCAGCAGCAGCAAGGGAGGCCGAATTGGAAGTGAACTTACACTGTCGTCATCAATGAGCGATCATCAAGAACATGTACAGTGGCAAGCAGGAGGTGGAGTAGTAGGGCCTCCACATTTGTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCGCCGCAGATATTAACACCCTCCCAAGGTTGGATCCACAAAAATGGCTTCCACACTACTCTCATGAGACCCTCTTCTTAA 1620 0.4877 MWDLNDSPDKRKNYESEEACSSPMDDDVRGKTLRSASNSSSSAVLLEDGSEEDEEQASRNNNNKTNSSKIFGFSVTPMDADDNDNPPVTHQFFPVKDSGSGGGGGVGGGGSSSSSSFPRAHWVGVKFCQSEGVVGGGGGKSGGAVEASQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGGNGAGDHNLDLSLGNPSSKHGNNQAPVTTDHRMTSNWHNDGANNNKHKLVNILPKPSSSGRSNIDQNGGQRESEGMAMRLLSHQTHHFHNQTPLSNEMHRYGGPYYRSHAPAPGDPPPPPPQMLHHAFPPNFHFPTSSSKGGRIGSELTLSSSMSDHQEHVQWQAGGGVVGPPHLLATAAAASSGFPPQILTPSQGWIHKNGFHTTLMRPSS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60519g00005 539 Pfam AP2 domain 164 212 IPR001471 GO:0003700|GO:0006355
Stsc60519g00005 539 Pfam AP2 domain 255 304 IPR001471 GO:0003700|GO:0006355
Stsc60519g00005 539 ProSiteProfiles AP2/ERF domain profile. 164 220 IPR001471 GO:0003700|GO:0006355
Stsc60519g00005 539 MobiDBLite consensus disorder prediction 1 32 - -
Stsc60519g00005 539 ProSiteProfiles AP2/ERF domain profile. 256 313 IPR001471 GO:0003700|GO:0006355
Stsc60519g00005 539 FunFam AP2-like ethylene-responsive transcription factor 255 315 - -
Stsc60519g00005 539 CDD AP2 255 315 IPR001471 GO:0003700|GO:0006355
Stsc60519g00005 539 SUPERFAMILY DNA-binding domain 163 221 IPR016177 GO:0003677
Stsc60519g00005 539 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 84 399 - -
Stsc60519g00005 539 MobiDBLite consensus disorder prediction 1 117 - -
Stsc60519g00005 539 FunFam AP2-like ethylene-responsive transcription factor 163 222 - -
Stsc60519g00005 539 PRINTS Ethylene responsive element binding protein signature 257 268 IPR001471 GO:0003700|GO:0006355
Stsc60519g00005 539 PRINTS Ethylene responsive element binding protein signature 295 315 IPR001471 GO:0003700|GO:0006355
Stsc60519g00005 539 CDD AP2 164 221 IPR001471 GO:0003700|GO:0006355
Stsc60519g00005 539 MobiDBLite consensus disorder prediction 320 397 - -
Stsc60519g00005 539 SUPERFAMILY DNA-binding domain 255 315 IPR016177 GO:0003677
Stsc60519g00005 539 MobiDBLite consensus disorder prediction 320 399 - -
Stsc60519g00005 539 Gene3D AP2/ERF domain 163 222 IPR036955 GO:0003700|GO:0006355
Stsc60519g00005 539 Gene3D AP2/ERF domain 255 314 IPR036955 GO:0003700|GO:0006355
Stsc60519g00005 539 SMART rav1_2 256 319 IPR001471 GO:0003700|GO:0006355
Stsc60519g00005 539 SMART rav1_2 164 226 IPR001471 GO:0003700|GO:0006355
Stsc60519g00005 539 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60519g00005 Stsc-Chr60519 33669 37090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60519g00005 1 367 AP2-EREBP Transcription Factor Family AT4G36920 66.933 4.96e-142 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc60519g00005 AP2 3.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60519g00005 K09284 - gmx:100786333 644.425