Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60519g00001 ATGACAAGTGTCAAAGTCATTTCAACAAGCACAATACATGCAGCAAACAAGAATTCAGAGGTAGTGGTGGATGAGGAGATACACTTAACTCCATGGGATCTCCAACTCCTCCTAGTTGATCCCATTCAGAAAGGCCTCCTCTTCCGTAACAACCCCATAACTACTCCACCACCACCAATCATAATCCAACACCTCAAACATTCCCTTTCATCCGCCCTTTCTTTCTTCCCACCCCTCGCGGGACGCCTTTCCGTTAAGGAACACCGCGACAACACTTCCTCCGTTTCCGTTATTTGTAACAACTTTGGGGCCCACTTTGTCCATGCCGTTGCGGATAACTACTCCGTCAACGACATCGTTAGTTCCATTTACACTCCACGATTTGTGCACTCTCTATTCCCGCTCAACAGAATTAGAAACTATGAAGGAATAACAAAGCCGTTGTTAGCGGTTCAAGTCACCGAGCTCAACGACGGTTACTTCATTGGCTGCACCATGAATCACGTTGTTGGAGACGGAACTTCCTTTTGGCATTTCATGAACTCATGGGCCGAGATCTCACGTGGATCGGAAGAATTGTCCAAGCCTCCCGTGCTTGACCGTTGGTTCTGCCTTGACGGAGTTCATGGCGGTTCCGCGGCTGCCATACATGTTCCTTTGACGAAGGAGAAGATGAAACAACGTGGCTACGACGGTTTCGTCTCAGAACTGCAACGAGAGAGGGTTTTCCATTTCACTAAAGACAAGATCGCTGAACTCAAGGCAAAAGCCAACGCAGAAATTCATGAAAGCGAAGGCAAGAACAAAGTATCTTCACTGCAAGCGGTTTTGACTCACCTATGGAGATCCGTGGTTCGGAACAAAGGTCTTGACCCCGAAGAAGAGGTGAATTACAAGTTGCTGATAGGTGCTAGAGGGAGAATGAAGAATCCGCCATTGGCGGAAAACTATTTTGGAAATGCGCTGCAAGACGGAACAGTTACGATGAAGGTTCGAGAGCTTCTAGAAGAAGGAGGGCTTGGAAAGGGTGCGTTGGAGATGAACAAAATGGTTGGTTTGCATACAGAGGAGAAGATGAAGAGCTACTATAGGAGTTGGGTGAAGAACCCTAGGCTTCTGACGGAAGGAGGTGTGGCTGGCAATGCTTTAGTGACAAGCAGTTCGCCGAGGTTTGATGTTTATGGGAATGATTTCGGGTGGGGGAAACCGGTGGCGGCGAGGAGTGGAGCTGGGAACAAAAGCCATGGTAAGATAACGGTTTTTGCTGGGGCGGAAGGTGGTGTTGACATTGAAGTTTGTCTTTCCTATGAGATATTGGAGGCTATGGGTAATGACCCTGAGTTCATGGGTGCCGTCTCCGCCACTTAA 1368 0.4825 MTSVKVISTSTIHAANKNSEVVVDEEIHLTPWDLQLLLVDPIQKGLLFRNNPITTPPPPIIIQHLKHSLSSALSFFPPLAGRLSVKEHRDNTSSVSVICNNFGAHFVHAVADNYSVNDIVSSIYTPRFVHSLFPLNRIRNYEGITKPLLAVQVTELNDGYFIGCTMNHVVGDGTSFWHFMNSWAEISRGSEELSKPPVLDRWFCLDGVHGGSAAAIHVPLTKEKMKQRGYDGFVSELQRERVFHFTKDKIAELKAKANAEIHESEGKNKVSSLQAVLTHLWRSVVRNKGLDPEEEVNYKLLIGARGRMKNPPLAENYFGNALQDGTVTMKVRELLEEGGLGKGALEMNKMVGLHTEEKMKSYYRSWVKNPRLLTEGGVAGNALVTSSSPRFDVYGNDFGWGKPVAARSGAGNKSHGKITVFAGAEGGVDIEVCLSYEILEAMGNDPEFMGAVSAT 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60519g00001 455 Gene3D - 238 444 IPR023213 -
Stsc60519g00001 455 Pfam Transferase family 3 449 - -
Stsc60519g00001 455 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 449 - -
Stsc60519g00001 455 Gene3D - 1 210 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60519g00001 Stsc-Chr60519 4612 6216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60519g00001 63 404 Monolignol Biosynthesis Gene Families AT5G48930 29.132 9.07e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60519g00001 - - pvy:116114536 488.419