Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60518g00019 ATGCCTCAGTATCAACCGTCTAAAGAAACTTCAAAGCTTGATGCTTTTTTGGGTCTAGATAACAAGGCCCTGCTGAAAGTTGCTGAGAAATTGGAGCTGAAGGTGATGATTGAGGAAATGGAATCTTCAACAAGCATTGATGATGTTCCTGCAGTGTTCATTTGTCCAATTTCACTTGAGCCAATGCAGGAGCCAGTTACACTTTGCACTGGCCAAACCTATGAAAGATCCAACATCCTCAAATGGTTCTCACTTGGCCACAGAACTTGCCCCATAACAATGCAAGAGCTTTGGGATGATGATGATGGTAGTAATTCTCTCACACCAAACAACACTCTCAGCCACTTGATCCTCACTTGGTTCTGTCACAAGTACATAACCATGAAGAAGAAATTGGAGGATGTTCAAGGTAGGGTCTTGGAACTCTTGGACACCCTCAAGAAGGTTAAGGGTCAAGCTAGAGTTAGAGCTCTTAAGGAACTTCACAAACTTGTTGAATCTCATGTTCAAGCAAGGAAATCAGTGGTGGAGAATAATGGGGTTGCTTTAGTTTCTAAACTTTTGGGGCCATTTACTTCTCATGCTGTTGGGTCAGAAGCAATTGGGATAATTGTGAATTTGGATTTGAGTTCTGAGTTGAAGAGGGATTTGGTGAATCCAGCTAAGGTGTCATTGTTGGTTGATATCATGAATGAAGGAACAATTGAGACCAAGATGAATTGTGCAAAGTTGATTCAAATTCTGCTTATGGAAGGTAAAAGTGGCATTGAAAATTATGAGATTGTTTCAAGTTTGAGTCTTTTGGTTGGGTTATTGAGGCTCATTAGGGATAAGAAACACCCAAATGGGGTCTTAATTGGCCTCAAATTACTCAAATCTATATGTTCATCATATGAATCAGTTAGAAGCTCAGTGGTAAGCATAGGAACAATTCCTCAATTGATTGAGTTATTACCAAATTGGAACAATGAGTGCTTAGAGATAGCACTCCATGTTCTTGATTTGTTGTCAACAATTCCAGAGGGTATTTTAGCATTGAAGCAGTGTCCAAAGATTGTTCCAAATGTGGTGAAGTTGTTGATGAGGGTCTCAGAGGATTGCACACAGTTTGCATTGTCAATATTGTTGGCTATTTACAAGATTGCCCCTGAGGAATGTGCATCACAAGCAGTGGAAGCTGGTTTGGCACCAAAGCTGTTGCTGGTGATTCAGAGTGGATGCAATCCAGTGTTGAAGCAGAAGTCTTCTGAGTTCTTGAAAATGTGCAGTTTGAATTACTCTACCAATATCTTGATTTCAAAGTGTATGCTTACCACAACAATACAATGA 1329 0.4011 MPQYQPSKETSKLDAFLGLDNKALLKVAEKLELKVMIEEMESSTSIDDVPAVFICPISLEPMQEPVTLCTGQTYERSNILKWFSLGHRTCPITMQELWDDDDGSNSLTPNNTLSHLILTWFCHKYITMKKKLEDVQGRVLELLDTLKKVKGQARVRALKELHKLVESHVQARKSVVENNGVALVSKLLGPFTSHAVGSEAIGIIVNLDLSSELKRDLVNPAKVSLLVDIMNEGTIETKMNCAKLIQILLMEGKSGIENYEIVSSLSLLVGLLRLIRDKKHPNGVLIGLKLLKSICSSYESVRSSVVSIGTIPQLIELLPNWNNECLEIALHVLDLLSTIPEGILALKQCPKIVPNVVKLLMRVSEDCTQFALSILLAIYKIAPEECASQAVEAGLAPKLLLVIQSGCNPVLKQKSSEFLKMCSLNYSTNILISKCMLTTTIQ 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60518g00019 442 Gene3D - 134 432 IPR011989 -
Stsc60518g00019 442 PANTHER WDSAM1 PROTEIN 38 428 IPR045185 GO:0061630
Stsc60518g00019 442 SMART Ubox_2 52 120 IPR003613 GO:0004842|GO:0016567
Stsc60518g00019 442 ProSiteProfiles U-box domain profile. 48 127 IPR003613 GO:0004842|GO:0016567
Stsc60518g00019 442 CDD RING-Ubox_PUB 50 101 IPR045210 -
Stsc60518g00019 442 SUPERFAMILY ARM repeat 150 425 IPR016024 -
Stsc60518g00019 442 SUPERFAMILY RING/U-box 41 122 - -
Stsc60518g00019 442 Pfam U-box domain 49 124 IPR003613 GO:0004842|GO:0016567
Stsc60518g00019 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 133 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60518g00019 Stsc-Chr60518 103660 104988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60518g00019 1 442 U-box Gene Family AT3G49810 57.050 4.62e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60518g00019 - - gmx:100803878 601.668