Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60518g00003 ATGGCGGTGTTATCGGAGATAAACGACGGTGACGAGGAGAACGAGCTGGACGAGGAGCCCGGCGAGGTGATCGAATCGGCACCGCCGCAGAAAGTCGGTGAAGAGAGGGAACTCAGTAACTGTGGACTGAAGAAGAAGCTCATCAAGCGCGGAACCGGTTGGGAAACCCCTGAACTCAACGATCAAGTCACTGTGCACTATGTTGGGACTTTGGAGGATGGAACCAAGTTTGATTCTAGTAGGGATAAAAATCAACCTATAACCTTCGCTCTTGGTCAAGGTGAACTGGCTGCTGGATTGGATCATGGAATAATCACCATGAAGAAGGGGGAGGTAGCTTTGTTCACGTTTCCTGATGAGTCTGGTGTTTCACCACCCAACTCCAAGAAGTTTGAGGTGGAGCTCATTTCGTGGATCAAAGTGGTGGATGTTTGCAGAGATGGTGGGATTATCAAGAAAATTATGGAGAAGGGGGCTGTGGACGAGCGACCCCGTGATCCAGATGAAGTCCTTGTTAAGTATCGGGTGGCACTAGCTGATGGAACTGTTGTTGCTGAAACACCGGATGAAGGAGTTGAATTTCATGTTAAGGATGGTCATCTTTTCCTGGGATTGCCAAGAGTAATCATGACTATGACAAAGGGAGAGAAGGCTCAATTAATTGTTCAACCCCAGTATGCTTTTGGAGAGAAGGGGAGTGAAGCTAACAATGGAGTCCATTCTGTTCCACCAAATTCAGTGCTGCATGTTAATATTGAATTGGTTTCTTTCAAGCCTGTCATAGATGTTACTGGTGACTCCAAGGTGCTTAAGAAAATCTTGAAAGAAGGGGAGGGTGCTTCCACAGCCAATGAGGGTGCAAATGTTACAGTCAGTTACACAGCAAAGCTAGAAGATGGAACTGTATTTGAGAAAAGAGGAATCGATGAAACTCATCCCTTGGAATTCATAACTGATGAAGAACAAGTTATTGTTGGTCTAGATCGAGCAGTGGTAACTATGAAGAAGGGTGAGAGAGCCATAATTAGCATACATCCTGATTATGCATTTGGAGATGTCGAAGCAAAACGAGATTTTGCCATCGTGCCACCAAGCTCACATGTAGTCTATGATGTTGAAATTAGAGATTTCATTAAGGAGAAAGCACCATGGGAATTGAAAAGTAACGAGAAAATTGAGCTGGCTAAAAGGAAGAAAGAAGAAGGCAATGTGTTATTTAAAGGTTGCAAGTATGAGAGGGCAGCCAAGAAGTATGATAAGGCTGCTGATTATGTTGGTGAAGATGGATCATTTGGGGATGATGAGGAAAAACAAGCTAAAGCACTAAGAGTTTCCTGCTGGTTGAACGGTGCAGCTTGTTGCCTTAAACTTAACGACTTCCCTGGAGCGATCAAGTTATGTTCGCAGGTGCTTGATGTTGAGTTTTGCAACGTAAAAGCATTGTACAGACGAGCGCAAGCATACATAGAGACTGGAGACTTTCTGTTGGCAGATGTAGACATCAAGAAAGCTCTTGAGCTGGACCCACAAAATAGGGAGGTAATGGTAATGAAGAAGAAATTAAAGCAACTTCAGGCTGAGAATGATAAGAAAGAGGCTAAGCTCTATGAAAATATGTTTGCGCATAAAGATAAGGACTCATCCGTGCCAACAAAGAGATTGAAGGTTGAGAAAGAAGTGGATGATGGGAGGAAAAATGAAGAGGCTGTCGCGATGGAAATGGACAAAGTTGCTGATAGTGCTGCTCCTTCTGTCGACGGTTTAAGTGTTGATTCATAA 1779 0.4401 MAVLSEINDGDEENELDEEPGEVIESAPPQKVGEERELSNCGLKKKLIKRGTGWETPELNDQVTVHYVGTLEDGTKFDSSRDKNQPITFALGQGELAAGLDHGIITMKKGEVALFTFPDESGVSPPNSKKFEVELISWIKVVDVCRDGGIIKKIMEKGAVDERPRDPDEVLVKYRVALADGTVVAETPDEGVEFHVKDGHLFLGLPRVIMTMTKGEKAQLIVQPQYAFGEKGSEANNGVHSVPPNSVLHVNIELVSFKPVIDVTGDSKVLKKILKEGEGASTANEGANVTVSYTAKLEDGTVFEKRGIDETHPLEFITDEEQVIVGLDRAVVTMKKGERAIISIHPDYAFGDVEAKRDFAIVPPSSHVVYDVEIRDFIKEKAPWELKSNEKIELAKRKKEEGNVLFKGCKYERAAKKYDKAADYVGEDGSFGDDEEKQAKALRVSCWLNGAACCLKLNDFPGAIKLCSQVLDVEFCNVKALYRRAQAYIETGDFLLADVDIKKALELDPQNREVMVMKKKLKQLQAENDKKEAKLYENMFAHKDKDSSVPTKRLKVEKEVDDGRKNEEAVAMEMDKVADSAAPSVDGLSVDS 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60518g00003 592 SUPERFAMILY FKBP-like 263 396 - -
Stsc60518g00003 592 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 60 258 IPR001179 GO:0003755
Stsc60518g00003 592 Gene3D - 34 141 IPR046357 GO:0003755
Stsc60518g00003 592 MobiDBLite consensus disorder prediction 544 566 - -
Stsc60518g00003 592 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 55 122 IPR001179 GO:0003755
Stsc60518g00003 592 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 163 255 IPR001179 GO:0003755
Stsc60518g00003 592 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 280 374 IPR001179 GO:0003755
Stsc60518g00003 592 SUPERFAMILY FKBP-like 38 144 - -
Stsc60518g00003 592 Gene3D Tetratricopeptide repeat domain 381 538 IPR011990 GO:0005515
Stsc60518g00003 592 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 286 378 IPR001179 GO:0003755
Stsc60518g00003 592 Gene3D - 260 380 IPR046357 GO:0003755
Stsc60518g00003 592 PANTHER PEPTIDYLPROLYL ISOMERASE 140 259 - -
Stsc60518g00003 592 ProSiteProfiles TPR repeat profile. 478 511 IPR019734 GO:0005515
Stsc60518g00003 592 Gene3D - 142 258 IPR046357 GO:0003755
Stsc60518g00003 592 MobiDBLite consensus disorder prediction 1 38 - -
Stsc60518g00003 592 FunFam Peptidylprolyl isomerase 259 380 - -
Stsc60518g00003 592 SMART tpr_5 478 511 IPR019734 GO:0005515
Stsc60518g00003 592 SMART tpr_5 395 428 IPR019734 GO:0005515
Stsc60518g00003 592 SMART tpr_5 444 477 IPR019734 GO:0005515
Stsc60518g00003 592 MobiDBLite consensus disorder prediction 8 22 - -
Stsc60518g00003 592 FunFam Peptidylprolyl isomerase 383 538 - -
Stsc60518g00003 592 SUPERFAMILY FKBP-like 146 259 - -
Stsc60518g00003 592 Coils Coil 507 534 - -
Stsc60518g00003 592 SUPERFAMILY TPR-like 390 543 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60518g00003 Stsc-Chr60518 16225 22749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60518g00003 31 541 Calmodulin-binding Proteins AT3G25230 55.939 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60518g00003 K09571 - gmx:100798382 848.195