Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60517g00025 ATGTCAACGCCACCACTCACCTCTTCCTATTCCTCTTCCTTTTGCTATGCATTCACCTATGATGTGTTTATCAGCTTTAGAGGCTCTGATACTCGCTACAGTTTCACTAACAATCTCTACCAAGCTCTCCATAGAAAGGGAATCCACACCTTCTTTGATGATGATGAACTTCGGAATGGAGAGGAGATCACGCAATCACTTGAAAAGGCAATTGGAGAATCTAGAATTGCCATTGTTGTGTTCTCCGAGAACTATGCATCTTCTTCCTTTTGCTTAGATGAACTGGTCAAGATCATGGAATGTATTAAGGGGAAGGGCCGGTGGGTCTTTCCGGTCTTTTATGATGTTGATCCTACTGAAGTGCGTCACCAAAAAGGAAGCTATGGAGAAGCGTTGACCAAGCATGAGGGGAGGTTCAAAGATGACAAGGAGAAAGTGCAGAAATGGAGGTCAGCTCTGCATCAAGCAGCTAACCTGTGCGGCAGTGATTTCAAACTTCAAAGGGAATATGAACATGCTTTTATTGAGAAGATCGTGAAGGAGATCTCAAACAGGATCAGTCGCGTTCCCTTAAATGTTGCTGAGTACCCTGTTGGACTGGAATCTCAGGTACCAGAAGTAAACAAGCTTCTAAATGGAGGATCTAATTGCAGAGCTGATATGGTAGGAATATACGGAGTTGGTGGAATAGGTAAAACAACACTTGCTAAACCAGTTTATAACTTGATTGCCGACCAATTTGAAGGTTTATGTTTTCTCGAAAATGTGAGGGAAAATTCAATTAGACATGGTTTAGCATATCTCCAAGAGTTATTTCTTTCAAAAACACTTAGAGAGAAAGATATAAAGCTAGCAAGTGAAAGTGAAGGAATTTCGTTAATAAAGCAAAGGTTAAAGAGAAAGAAGGTTCTGTTGGTTCTTGATGATGTTGACAAACTTGAGCAACTGAAGGCAATTGCTGGAAGGGCCGATTGGTTTGGTTCTGGAAGCATAGTCATCATAACAACTCGGGACAAACATGTGTTGGCAAGTCATCTGGTGGAGAGAACATATCAAGTGAAGGAATTTGATGATAAAGAGGCACTTGAGTTGCTTAGTTGGAATGCCTTCAAACATGAAAATGTTGATCCAAGCTATACGAACATTTTAAATGAAGTAGTGTCCTATGCTTCTGGGCTTCCATTGGCACTCGAGGTAATAGGTTCAAATTTGTATGGAAGAAGTGTAGAAGAATGGGTATCTGCGTTAGATGAGTATAAGAAAATCCCTAATAACGATATCCAAAAGATACTTAAAGTAAGCTTTGATGCTTTGGGGGAATATCATCAAAATATTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATAGTGTGGCAGAGCTTGAACACATTCTCCACGCTCATCATGATGTTAGCCCGAAACTTGGCATTTGTGTGTTGGTTGAAAGATCTCTAATAAAGATTGATGAGTTCGGTTACCTGAGACAACATGACTTGATTCAAGATATGGGCCGAGAAGTTTTTCGTCAACAATCACCAAAGGATCCTGGTAAACGTAGTCGATTATGGCTTCCTGAAGAAGTTATGCAAGTCTTACAGCAGAACATAGGAACCAATGAAATCGAGCTCATATTTCTGGAAGCTCCCATGTCTAAAGTAATAGATTGGGATGGAGAGGCCTTCAGAAAGATGGGAAACCTCAAATCACTTATTATTAAAAGTGGCAATTTTTTCAATGGTCCCAATCATCTTCCCAATAGTTTGAGAGTGTTGGAATGGCATGGATATCCTTCACATTCTTTACCACCTGATTTTCATCCAAAGAAGCTTTCCATACTCATGTTGCCCAACAATTGCTTTACACCACTACCGATAGTTAAGCTATTAAAGGAGTTTCAGGATATGACTGTTTTGGATTTTAGTTGGAATGATTGGATAACATATATACCCGATGTTTCAAGTGCCCCTAATTTAAAAGGATTACGCTTTGCATGTTGTGAAAATTTAGTTAAAATTGATGAGTCAGTTGGATTTTTGGGTAAGCATAGAGTATTAGATGTTCAAGGTTGTACAAAACTTAGGAGACTTCCTTCACTGATGTTACCCTCTCTCAGGCTACTCACTGTTGCGAAATGTTATAGTCTTGAGAGTTTTCCTGAAATATTGGTAAAAATGGAAAACATAACATATCTTGACTTGGTTAAGACATCCATAAGAGAATTGCCATATTCCATTTGTAATCTTACTGGTCTTCAAGAGTTGATTCTGGATAATCCTAGAAGTCAAACTATGATGTTACCAAGTAGCATTTTCATGTTTGGAGAACTCAGGAAGTTGGATTTTCAAGGATATAAGTTGCTATTATCTAATGAAGAAGGTACAGGGCAAGGGAGCACAACATCGGGGTCAGCCAAGACATATCTTAATTTGTGTTCATGTAACCTGTCAGATAAATTGCTTGGAATATTTCTTTCTGGGTTTCCCAATTTGGAACGTTTATCCTTGTCAGATAGTAATATCACAGTTCTTCCGTCATGCATAAAAAATTGTCACCTTTTGAGGTATCTTGATGTTTACGGATGCAAGAATCTTCAAGAGATTAGAGGGATTCCACCCAACATAGAATATGAACTGCATGAGTTTGTCGGAAAGAAGAGATTTATTTTGCCAGGAACAAGCATTCCAAGTTGGTTTGAGAATCAGTGCAGTGGGCAACCAATTACTTTCTGGTTTCGTAATAAGTTCCCTGCCATATCTCTCTGCTTTCTTTTGAAGGACAATGCTTACCATATGGATAATATGTTTCCTCATTTGAAATTGGTCTCTAATGATTGGCACATATTTCATGATGAAATTCACATGAATCATCCTGGTCATATATGGATTTATGATTTAGAAGATAATCCGGATCAACCGTTTCAACACAATGAATGGAATCAGGCGGTGCTCTCTCTTTCAAAAGGTAATATTGAGAAGCAAGTGAGTCTGAGCCTAGAGGAGTGGGGTAGCATAGCAATTGGAGTGCATATAATAAAAGAAAGAAGTAACATGGATGATATCAAATTCACTCATCCACTTTTGGACAACCACCATGTGCATGACCTGGGATTATCACTTCCACCTCCACCACTCAGCAATAATTTTGAATGGGATCGGAGGACATTTGTTATCCGAGGTTACTACTCAACAAAGGCCGAAGAATCTAAGTTTCACCTATCAGGTAAGAAATATGACTTTTTCACTACTGTAGCAGAAAACGAAGACGATACAATAGAAGAACAATTATACGATGGAGAAGAGATTTGA 3306 0.3878 MSTPPLTSSYSSSFCYAFTYDVFISFRGSDTRYSFTNNLYQALHRKGIHTFFDDDELRNGEEITQSLEKAIGESRIAIVVFSENYASSSFCLDELVKIMECIKGKGRWVFPVFYDVDPTEVRHQKGSYGEALTKHEGRFKDDKEKVQKWRSALHQAANLCGSDFKLQREYEHAFIEKIVKEISNRISRVPLNVAEYPVGLESQVPEVNKLLNGGSNCRADMVGIYGVGGIGKTTLAKPVYNLIADQFEGLCFLENVRENSIRHGLAYLQELFLSKTLREKDIKLASESEGISLIKQRLKRKKVLLVLDDVDKLEQLKAIAGRADWFGSGSIVIITTRDKHVLASHLVERTYQVKEFDDKEALELLSWNAFKHENVDPSYTNILNEVVSYASGLPLALEVIGSNLYGRSVEEWVSALDEYKKIPNNDIQKILKVSFDALGEYHQNIFLDIACCFKGYSVAELEHILHAHHDVSPKLGICVLVERSLIKIDEFGYLRQHDLIQDMGREVFRQQSPKDPGKRSRLWLPEEVMQVLQQNIGTNEIELIFLEAPMSKVIDWDGEAFRKMGNLKSLIIKSGNFFNGPNHLPNSLRVLEWHGYPSHSLPPDFHPKKLSILMLPNNCFTPLPIVKLLKEFQDMTVLDFSWNDWITYIPDVSSAPNLKGLRFACCENLVKIDESVGFLGKHRVLDVQGCTKLRRLPSLMLPSLRLLTVAKCYSLESFPEILVKMENITYLDLVKTSIRELPYSICNLTGLQELILDNPRSQTMMLPSSIFMFGELRKLDFQGYKLLLSNEEGTGQGSTTSGSAKTYLNLCSCNLSDKLLGIFLSGFPNLERLSLSDSNITVLPSCIKNCHLLRYLDVYGCKNLQEIRGIPPNIEYELHEFVGKKRFILPGTSIPSWFENQCSGQPITFWFRNKFPAISLCFLLKDNAYHMDNMFPHLKLVSNDWHIFHDEIHMNHPGHIWIYDLEDNPDQPFQHNEWNQAVLSLSKGNIEKQVSLSLEEWGSIAIGVHIIKERSNMDDIKFTHPLLDNHHVHDLGLSLPPPPLSNNFEWDRRTFVIRGYYSTKAEESKFHLSGKKYDFFTTVAENEDDTIEEQLYDGEEI 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60517g00025 1101 PRINTS Disease resistance protein signature 390 404 - -
Stsc60517g00025 1101 PRINTS Disease resistance protein signature 699 715 - -
Stsc60517g00025 1101 PRINTS Disease resistance protein signature 297 311 - -
Stsc60517g00025 1101 PRINTS Disease resistance protein signature 221 236 - -
Stsc60517g00025 1101 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 188 - -
Stsc60517g00025 1101 Gene3D - 17 187 IPR035897 -
Stsc60517g00025 1101 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 763 IPR044974 GO:0006952
Stsc60517g00025 1101 Pfam TIR domain 20 186 IPR000157 GO:0007165
Stsc60517g00025 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 449 IPR027417 -
Stsc60517g00025 1101 SUPERFAMILY L domain-like 497 880 - -
Stsc60517g00025 1101 ProSiteProfiles TIR domain profile. 18 186 IPR000157 GO:0007165
Stsc60517g00025 1101 Gene3D Ribonuclease Inhibitor 710 939 IPR032675 -
Stsc60517g00025 1101 Pfam NB-ARC domain 203 436 IPR002182 GO:0043531
Stsc60517g00025 1101 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Stsc60517g00025 1101 SMART till_3 19 159 IPR000157 GO:0007165
Stsc60517g00025 1101 Gene3D - 356 439 IPR042197 -
Stsc60517g00025 1101 Gene3D - 188 351 IPR027417 -
Stsc60517g00025 1101 Gene3D Ribonuclease Inhibitor 526 709 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60517g00025 Stsc-Chr60517 98629 102633 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60517g00025 14 783 WRKY Transcription Factor Family AT4G12020 30.076 2.55e-79 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60517g00025 - - ahf:112801816 1457.58