Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60517g00021 ATGATGCAAACTTCATTACTCACCCCTTCCTCTTCCTTTCGCTATGCATTTAAGTATGAGGTGTTCATCAGTTTTAGAGGCACTGATACTCGCAAAGATTTCACTAACAATCTCTACCAAGCTCTCCTTAGAAAGGGAATCCACACCTTCTTTGATGACGAGGAGCTTCGGAAAGGAGAGGAGATCACACCCGCACTTCTGGAGGCAATTGAAGGATCTAGAATTGCCATTGTTGTGTTCTCCAAGAACTATGCATCTTCTTCCTTTTGCTTACTTGAACTTGCCAAGATCATGGAGTGCATTAAGGGCAATGGCCGTTGGATCTTTCCAGTCTTTTATGATGTTGAACCTAGCGACATGCGACGCCAAAAAGGAACGTATGAAGATGCGTTTACGAAGCATGAGGAGAGGTTCAAGGATGACAAGGAGAAAGTGTTGACATGGAGGGAAGCTCTGAAACAAGCGGCTGACCTATCTGGGAATCATTTCAAACTTGATCATGGAGAACATGAATATGATTTTATTGAGAAGATCGTGAAGGAGATCTCAAACAGGATCGCTCGTGTTCCTTTGCATGTTGCCGACTACCCTGTTGGACTCGAATCTCGACTACTAGAAGTAACCAAGCTTCTAAATGGTGAATCTGATAGTGGAGCCCGTATGATAGGGATATATGGAGTTGGTGGAATTGGTAAAACAACTCTTGCTAAAGCACAAAGATTCAAGAGCAAGAAGGTTCTGTTGGTTCTTGATGATGTTGACAAACTTGAGCAACTGCAGGCAATTGCTGGAAAGCCCGATTGGTTTGGTTCTGGAAGCATCATCATCATAACGACTCGGGACAAACATTTGTTGGCAAGTCATCTGGTGGAGAGAACATATCAAGTGAAGGATTTTGATAAACAAGAGGCAAGTAAGTTGCTTAGTTGGAATGCTTTTAAACATGAAAATGTTGATTCAAGCTATATGGACATTTTAAAAGAAGTAGTGTCCTATGCTTCTGGGCTTCCATTGGCTCAGGAGGTAATAGGTTCAAATTTGTATGGAAGAAGTGTAGAAGAATGGATATCTGCATTAGATGAGTATAAAAGAATCCCTAATAAAGATATCCAAAGGATACTCAAAGTAAGTTTTGATGCTTTAGAGGAATATCATCAGAAGCTTTTTCTTGATATTGCTTGTTGCTTCAAAGGATATGGTTTTGAAGATCTTAAATATCCACTTCATGCTCTTCATGATGTTAGCCCAATATTTGGTATCCGTGTGTTGGCTGAAAGATCTCTGATAAAGATTGATAAGGATGGCCCTGTGACACAGCATGACTTGATTCAAGATATGGGCAGAGAAATTGTTAGGCAAGAATCACTGGAAAATCCTGGTAAACGTAGTAGGTTATGGCTTCCCGAAGATGTCTTGCAAGTTTTACAAGAGAACATTGGAACCAATAAAATCGAGCTCATGTTTCTGGAAGCTCCGATGTCTAAAGTAATGGATTGGGATGGAGAGGCCTTCAGAAAGATGGGAAACCTCAAAGCACTTATTATTAAAAGTGGCAATTTTTTAAATCGTCCCAATTATCTTCCAAACAGTTTAAGAGTGTTGGAATGGCGGGGATATGCTTCACATTCTTTACCTGCTGATTTTCATCCAAAGAAGCTTTGCATACTCAAGTTGCCCAACAATTGCTTCACACAACTCCCGTTAGTTAAGCTATTAAAATGA 1722 0.4036 MMQTSLLTPSSSFRYAFKYEVFISFRGTDTRKDFTNNLYQALLRKGIHTFFDDEELRKGEEITPALLEAIEGSRIAIVVFSKNYASSSFCLLELAKIMECIKGNGRWIFPVFYDVEPSDMRRQKGTYEDAFTKHEERFKDDKEKVLTWREALKQAADLSGNHFKLDHGEHEYDFIEKIVKEISNRIARVPLHVADYPVGLESRLLEVTKLLNGESDSGARMIGIYGVGGIGKTTLAKAQRFKSKKVLLVLDDVDKLEQLQAIAGKPDWFGSGSIIIITTRDKHLLASHLVERTYQVKDFDKQEASKLLSWNAFKHENVDSSYMDILKEVVSYASGLPLAQEVIGSNLYGRSVEEWISALDEYKRIPNKDIQRILKVSFDALEEYHQKLFLDIACCFKGYGFEDLKYPLHALHDVSPIFGIRVLAERSLIKIDKDGPVTQHDLIQDMGREIVRQESLENPGKRSRLWLPEDVLQVLQENIGTNKIELMFLEAPMSKVMDWDGEAFRKMGNLKALIIKSGNFLNRPNYLPNSLRVLEWRGYASHSLPADFHPKKLCILKLPNNCFTQLPLVKLLK 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60517g00021 573 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 160 IPR035897 -
Stsc60517g00021 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 392 IPR027417 -
Stsc60517g00021 573 Gene3D - 299 382 IPR042197 -
Stsc60517g00021 573 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 188 - -
Stsc60517g00021 573 Pfam NB-ARC domain 241 379 IPR002182 GO:0043531
Stsc60517g00021 573 Gene3D - 240 292 IPR027417 -
Stsc60517g00021 573 SUPERFAMILY L domain-like 486 569 - -
Stsc60517g00021 573 SMART till_3 18 158 IPR000157 GO:0007165
Stsc60517g00021 573 Gene3D - 189 239 IPR027417 -
Stsc60517g00021 573 SUPERFAMILY "Winged helix" DNA-binding domain 369 476 IPR036390 -
Stsc60517g00021 573 Pfam TIR domain 18 185 IPR000157 GO:0007165
Stsc60517g00021 573 ProSiteProfiles TIR domain profile. 17 186 IPR000157 GO:0007165
Stsc60517g00021 573 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 239 568 IPR044974 GO:0006952
Stsc60517g00021 573 Gene3D - 14 188 IPR035897 -
Stsc60517g00021 573 PRINTS Disease resistance protein signature 221 236 - -
Stsc60517g00021 573 PRINTS Disease resistance protein signature 505 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60517g00021 Stsc-Chr60517 85118 87230 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60517g00021 198 566 WRKY Transcription Factor Family AT5G45050 31.778 5.68e-45 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60517g00021 - - adu:107489836 620.542